Fit improvements when comparing MG94xREV to SynREV and SynREVCodon models fitted jointly to subsets of multiple alignments
| # Genes . | LRT P-value versus MG94 P-value Mean (range) . | ΔAIC/alignment Mean (range) . | ||
|---|---|---|---|---|
| SynREV . | SynREVCodon . | SynREV . | SynREVCodon . | |
| 4 | 0.121 (0.000, 0.599) | 0.023 (0.000, 0.114) | 0.369 (−4.762, 2.415) | −3.973 (−13.203, −0.518) |
| 8 | 0.012 (0.000, 0.038) | 0.000 (0.000, 0.002) | 0.561 (−0.672, 1.683) | 0.138 (−3.722, 4.881) |
| 16 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 2.550 (1.261, 4.521) | 5.198 (2.331, 10.588) |
| 32 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.169 (1.576, 4.170) | 8.249 (5.252, 12.248) |
| 64 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.469 (2.615, 3.882) | 9.435 (7.614, 10.026) |
| 128 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.819 (3.427, 4.333) | 10.060 (9.031, 10.680) |
| 256 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.843 (3.628, 4.181) | 10.092 (9.369, 11.070) |
| 512 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.608 (3.338, 3.852) | 10.100 (9.285, 10.624) |
| 1024 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.799 (3.678, 3.907) | 10.413 (10.239, 10.735) |
| 2048 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.718 (3.617, 3.771) | 10.261 (10.075, 10.380) |
| # Genes . | LRT P-value versus MG94 P-value Mean (range) . | ΔAIC/alignment Mean (range) . | ||
|---|---|---|---|---|
| SynREV . | SynREVCodon . | SynREV . | SynREVCodon . | |
| 4 | 0.121 (0.000, 0.599) | 0.023 (0.000, 0.114) | 0.369 (−4.762, 2.415) | −3.973 (−13.203, −0.518) |
| 8 | 0.012 (0.000, 0.038) | 0.000 (0.000, 0.002) | 0.561 (−0.672, 1.683) | 0.138 (−3.722, 4.881) |
| 16 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 2.550 (1.261, 4.521) | 5.198 (2.331, 10.588) |
| 32 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.169 (1.576, 4.170) | 8.249 (5.252, 12.248) |
| 64 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.469 (2.615, 3.882) | 9.435 (7.614, 10.026) |
| 128 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.819 (3.427, 4.333) | 10.060 (9.031, 10.680) |
| 256 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.843 (3.628, 4.181) | 10.092 (9.369, 11.070) |
| 512 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.608 (3.338, 3.852) | 10.100 (9.285, 10.624) |
| 1024 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.799 (3.678, 3.907) | 10.413 (10.239, 10.735) |
| 2048 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.718 (3.617, 3.771) | 10.261 (10.075, 10.380) |
Means and ranges refer to the 5 random subsets of genes for a given batch size.
Fit improvements when comparing MG94xREV to SynREV and SynREVCodon models fitted jointly to subsets of multiple alignments
| # Genes . | LRT P-value versus MG94 P-value Mean (range) . | ΔAIC/alignment Mean (range) . | ||
|---|---|---|---|---|
| SynREV . | SynREVCodon . | SynREV . | SynREVCodon . | |
| 4 | 0.121 (0.000, 0.599) | 0.023 (0.000, 0.114) | 0.369 (−4.762, 2.415) | −3.973 (−13.203, −0.518) |
| 8 | 0.012 (0.000, 0.038) | 0.000 (0.000, 0.002) | 0.561 (−0.672, 1.683) | 0.138 (−3.722, 4.881) |
| 16 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 2.550 (1.261, 4.521) | 5.198 (2.331, 10.588) |
| 32 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.169 (1.576, 4.170) | 8.249 (5.252, 12.248) |
| 64 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.469 (2.615, 3.882) | 9.435 (7.614, 10.026) |
| 128 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.819 (3.427, 4.333) | 10.060 (9.031, 10.680) |
| 256 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.843 (3.628, 4.181) | 10.092 (9.369, 11.070) |
| 512 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.608 (3.338, 3.852) | 10.100 (9.285, 10.624) |
| 1024 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.799 (3.678, 3.907) | 10.413 (10.239, 10.735) |
| 2048 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.718 (3.617, 3.771) | 10.261 (10.075, 10.380) |
| # Genes . | LRT P-value versus MG94 P-value Mean (range) . | ΔAIC/alignment Mean (range) . | ||
|---|---|---|---|---|
| SynREV . | SynREVCodon . | SynREV . | SynREVCodon . | |
| 4 | 0.121 (0.000, 0.599) | 0.023 (0.000, 0.114) | 0.369 (−4.762, 2.415) | −3.973 (−13.203, −0.518) |
| 8 | 0.012 (0.000, 0.038) | 0.000 (0.000, 0.002) | 0.561 (−0.672, 1.683) | 0.138 (−3.722, 4.881) |
| 16 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 2.550 (1.261, 4.521) | 5.198 (2.331, 10.588) |
| 32 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.169 (1.576, 4.170) | 8.249 (5.252, 12.248) |
| 64 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.469 (2.615, 3.882) | 9.435 (7.614, 10.026) |
| 128 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.819 (3.427, 4.333) | 10.060 (9.031, 10.680) |
| 256 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.843 (3.628, 4.181) | 10.092 (9.369, 11.070) |
| 512 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.608 (3.338, 3.852) | 10.100 (9.285, 10.624) |
| 1024 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.799 (3.678, 3.907) | 10.413 (10.239, 10.735) |
| 2048 | 0.000 (0.000, 0.000) | 0.000 (0.000, 0.000) | 3.718 (3.617, 3.771) | 10.261 (10.075, 10.380) |
Means and ranges refer to the 5 random subsets of genes for a given batch size.
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