Table 7 Open in new tab Estimates of ω...

Table 7

Estimates of ω under different models for the alignment of 10 sequences for the barren gene (FBgn0014127)

Model	ω	log(L)	LRT P-value	SD [ɑ]
MG94	0.085	−7040.8	n/a	0.000
SynREV	0.074	−7023.43	0.007	0.268
SynREVCodon	0.063	−6982.27	0.0002	0.744
Joint codon empirical	0.085	−7026.40	<10⁻⁶	0.176
Joint codon discretized	0.041	−7024.58	<10⁻⁶	0.200

Model	ω	log(L)	LRT P-value	SD [ɑ]
MG94	0.085	−7040.8	n/a	0.000
SynREV	0.074	−7023.43	0.007	0.268
SynREVCodon	0.063	−6982.27	0.0002	0.744
Joint codon empirical	0.085	−7026.40	<10⁻⁶	0.176
Joint codon discretized	0.041	−7024.58	<10⁻⁶	0.200

LRT P-value is computed using MG94 as null, with the appropriate number of degrees of freedom for each model (17, 67, 0, 1). SD [ɑ] is computed directly on the distribution of 68 codon-pair rates for each model.

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