Table 1
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Number of variants inferred from the Sta. aureus outbreak dataset by Snippy and the three SKA commands

 Snippyska alignska mapska lo
Number of SNPs9286 / 8686 / 8690 / 92
Number of indels18NDND13 / 19
 Snippyska alignska mapska lo
Number of SNPs9286 / 8686 / 8690 / 92
Number of indels18NDND13 / 19

For the SKA commands, the left and right values were obtained with k-mer sizes of 21 and 41, respectively. ND = not detected.

Table 1
Open in new tab

Number of variants inferred from the Sta. aureus outbreak dataset by Snippy and the three SKA commands

 Snippyska alignska mapska lo
Number of SNPs9286 / 8686 / 8690 / 92
Number of indels18NDND13 / 19
 Snippyska alignska mapska lo
Number of SNPs9286 / 8686 / 8690 / 92
Number of indels18NDND13 / 19

For the SKA commands, the left and right values were obtained with k-mer sizes of 21 and 41, respectively. ND = not detected.

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