Abstract

Cornelia de Lange syndrome (CdLS), which is reported to affect ∼1 in 10 000 to 30 000 newborns, is a multisystem organ developmental disorder with relatively mild to severe effects. Among others, intellectual disability represents an important feature of this condition. CdLS can result from mutations in at least five genes: nipped-B-like protein, structural maintenance of chromosomes 1A, structural maintenance of chromosomes 3, RAD21 cohesin complex component and histone deacetylase 8 (HDAC8). It is believed that mutations in these genes cause CdLS by impairing the function of the cohesin complex (to which all the aforementioned genes contribute to the structure or function), disrupting gene regulation during critical stages of early development. Since intellectual disorder might result from alterations in neural development, in this work, we studied the role of Hdac8 gene in mouse neural stem cells (NSCs) and in vertebrate (Danio rerio) brain development by knockdown and chemical inhibition experiments. Underlying features of Hdac8 deficiency is an increased cell death in the developing neural tissues, either in mouse NSCs or in zebrafish embryos.

Introduction

Growth curve and apoptosis of the PCI34051 treated cells. Reddish colors represent the controls, greenish colors represent PCI34051 treated cells. (A) In red #A DMSO, in purple #B DMSO, in pink #C DMSO; in light green #A PCI34051, in green #B PCI34051, in bright green #C PCI34051; in purple with dashed line represents the mean of the three samples treated with DMSO, in green with dashed line represents the mean of the samples treated with PCI34051. (B) Apoptosis levels induced by PCI34051treatment expressed as absorbance (Y axis) per samples (x axis).
Figure 1

Growth curve and apoptosis of the PCI34051 treated cells. Reddish colors represent the controls, greenish colors represent PCI34051 treated cells. (A) In red #A DMSO, in purple #B DMSO, in pink #C DMSO; in light green #A PCI34051, in green #B PCI34051, in bright green #C PCI34051; in purple with dashed line represents the mean of the three samples treated with DMSO, in green with dashed line represents the mean of the samples treated with PCI34051. (B) Apoptosis levels induced by PCI34051treatment expressed as absorbance (Y axis) per samples (x axis).

During embryonic development and, in mouse, up to 4 weeks after birth, the brain is shaped by immature neurons generated in excessive number that die before maturation is completed. This process is fundamental for achieving optimal brain connectivity, and a number of brain disorders have been associated with altered neuronal cell death (1,2). It has also been shown that disturbing this finely tuned developmental process exerts detrimental effects on cell composition and global brain activity impacting on cognition (3). Signals involved in this balance are numerous and vary both during developmental stages and within involved brain areas. Some signals are considered `core’, thereby inhibiting cell death allowing for proliferation and differentiation, others are `neuron-type specific’ reflecting differences in receptors expressed on the cell membrane (4,5). Neurogenesis during embryonic development, hence, envisages excessive differentiated neurons that will be removed if not fully integrated, starting from a pool of progenitor cells named neural stem cells (NSCs). In lower mammals such as mice primitive NSCs are present from embryonic day 5.5 (E5.5). At E7.5, neural induction begins and the forming neural tube gives rise to the brain and the spinal cord. The cell population composing the neural tube consists of a relatively homogenous population of neuroepithelial cells that proliferate and expand through symmetric division. In the developing embryo, radial glial cells comprise NSCs that divide symmetrically to increase pool size and originate progenitors that migrate away from the periventricular germinal zone (6). In adults, the subventricular zone (SVZ), which extends along the length of the lateral wall of the lateral ventricles, and the dentate gyrus of the hippocampus represent the two most important reservoirs of NSCs (7). NSCs’ self-renewal, expansion, division and differentiation are controlled by a number of factors, both extrinsic (such as morphogens) and intrinsic (such as epigenetic modifications). Among these, hierarchically prominent role has been shown for chromatin remodeling, including accessibility and histone modifications (8). Interestingly, Cornelia de Lange syndrome (CdLS) is a genetic disorder caused by mutations in genes codifying for proteins regulating both chromatin features (CdLS1 MIM Mendelian Inheritance in Man 122470, CdLS2 MIM 300590, CdLS3 MIM 610759, CdLS4 MIM614701, CdLS5 MIM 300882). Indeed, 80% of CdLS patients present mutations in one of five genes: NIPBL Nipped-B-like protein, structural maintenance of chromosomes 1A (SMC1A), structural maintenance of chromosomes 3 (SMC3), RAD21 cohesin complex component (RAD21) and histone deacetylase 8 (HDAC8) (9). The first four genes are part of the cohesin complex, a multimeric structure controlling chromosomal cohesion in all eukaryotic cells (10). The fifth gene, HDAC8, encodes for a class I histone deacetylase, hence considered an `eraser’ in the epigenetic machinery components (11) with a known target (SMC3) in the cohesin complex (12). The present study sought to ascertain HDAC8 role in mammalian NSCs’ capabilities and during vertebrate embryonic brain development, with a particular emphasis on cell death as previous studies have shown the fundamental role of cohesin complex to maintain viable cells during embryonic development in neural tissues and given the importance of HDAC8 in regulating a master regulator of cell death (i.e. p53) (13–18).

Results

HDAC8 inhibition reduces murine NSCs’ proliferation rate, inducing apoptosis and differentiating capabilities

During the proliferative phase, cells continuously treated with a specific inhibitor of HDAC8 activity N-hydroxy-1-[(4-methoxyphenyl)methyl]-1H-indole-6-carboxamide showed a lower proliferative capability. The proliferation of PCI34051-treated NSCs was significantly lower compared to controls, as shown in Figure 1A, in which the average of three experiments for each culture is shown. The slopes of the growth curves are significantly different (P < 0.044) and the overall number of cells treated with PCI34051 decreased during culture whereas the number of the cells treated with dimethyl sulfoxide (DMSO) (CTR) Control exponentially increased during the experiment. Analysis of cell death revealed a significant increase in apoptosis following treatment with the inhibitor (Fig. 1B).

Treatment with HDAC8 inhibitor caused a change in differentiation capabilities significantly reducing the levels of expression of β-tubulin III P < 0.01 (Fig. 2) of ∼50% at both time points (Fig. 2B and C).

Immunofluorescence analysis of NSCs differentiation. (A) DMSO-treated sample (controls). (B) PCI34051-treated sample for 3 days. (C) PCI34051-treated sample for 5 days. (A’) Magnification of white box in A showing β-tubulin III and GFAP positive cells. (D) White column CTR (DMSO-treated), gray column PCI34051-treated cell between days 5 and 7 of the differentiation, black column PCI34051-treated cell between days 3 and 7 of the differentiation. **= P < 0.0017. Scale bar indicates in A = 25 μm, in A’ = 10 μm, Blue DAPI, green GFAP, red β-tubulin III.
Figure 2

Immunofluorescence analysis of NSCs differentiation. (A) DMSO-treated sample (controls). (B) PCI34051-treated sample for 3 days. (C) PCI34051-treated sample for 5 days. (A’) Magnification of white box in A showing β-tubulin III and GFAP positive cells. (D) White column CTR (DMSO-treated), gray column PCI34051-treated cell between days 5 and 7 of the differentiation, black column PCI34051-treated cell between days 3 and 7 of the differentiation. **= P < 0.0017. Scale bar indicates in A = 25 μm, in A’ = 10 μm, Blue DAPI, green GFAP, red β-tubulin III.

Proliferative changes induced in NSCs by the knockdown of Hdac8 NSCs. The knockdown of Hdac8 transcript causes a significant reduction of NSCs proliferation in all three analyzed cultures. The analysis was performed comparing also PC134051 effects. Bars represent from left to right, for each dataset, CTR, PCI34051, CTR siRNA, HDAC8.1, HDAC8.2 and HDAC8.1+ HDAC8.2.
Figure 3

Proliferative changes induced in NSCs by the knockdown of Hdac8 NSCs. The knockdown of Hdac8 transcript causes a significant reduction of NSCs proliferation in all three analyzed cultures. The analysis was performed comparing also PC134051 effects. Bars represent from left to right, for each dataset, CTR, PCI34051, CTR siRNA, HDAC8.1, HDAC8.2 and HDAC8.1+ HDAC8.2.

Hdac8 silencing reduces murine NSCs’ proliferation rate and differentiating capabilities

The knockdown of Hdac8 transcript in NSCs using specific small interfering ribonucleic acids (siRNAs) induced a significant reduction of the proliferative capability. siRNAs effects were synergist, although of less impact compared to inhibitor treatment (Fig. 3). The knockdown of Hdac8 transcript in NSCs induced a significant reduction of proliferation in all analyzed samples, with a stronger effect upon using a combination of HDAC8.1 and HDAC8.2 siRNA (10 nM each). Nevertheless, even the single treatments were able to induce a significant (P < 0.05; sample A) or highly significant (P < 0.001; sample C) reduction of NSCs’ proliferation. The knockdown of Hdac8 transcript in differentiating NSCs reduces, ∼30%, in a not significant fashion the expression of β-tubulin III (Fig. 4), supporting the outcome observed following chemical inhibition.

Changes in differentiation induced in NSCs by the knockdown of Hdac8 NSCs. The knockdown of Hdac8 transcript causes an alteration of NSCs’ differentiation. The analysis was performed comparing also PCI34051 effects. Bars represent from left to right CTR (3/7), PCI34051 (3/7), CTR siRNA (3/7), HDAC8.1 + HDAC8.2 (3/7), CTR siRNA (5/7) and HDAC8.1 + HDAC8.2 (5/7).
Figure 4

Changes in differentiation induced in NSCs by the knockdown of Hdac8 NSCs. The knockdown of Hdac8 transcript causes an alteration of NSCs’ differentiation. The analysis was performed comparing also PCI34051 effects. Bars represent from left to right CTR (3/7), PCI34051 (3/7), CTR siRNA (3/7), HDAC8.1 + HDAC8.2 (3/7), CTR siRNA (5/7) and HDAC8.1 + HDAC8.2 (5/7).

Zebrafish hdac8 identification and expression analyses

The human HDAC8 amino acid sequence was used as a query for identifying in silico the zebrafish hdac8 gene. NCBI (http://www.ncbi.nlm.nih.gov/BLAST/), ClustalW (http://www.ebi.ac.uk/Tools/clustalw/) and SMART (http://smart.embl-heidelberg.de/) tools were used for basic handling and analyses of the nucleotide and protein sequences. Zebrafish hdac8 is present in a single copy on chromosome 7 (nucleotide position: 51 710 354–51 749 895).

Characterization of zebrafish hdac8 expression, using reverse transcription-Polymerase Chain Reaction assays (RT-PCR) techniques, revealed that the transcript was present from the first stages of development up to 4 days post-fertilization (dpf), thus including maternal and zygotic transcription (Fig. 5A). Moreover, zebrafish hdac8 was found to be expressed through development and in adult organs such as muscles, oocytes, brain and gut (Fig. 5B).

Expression analysis of hdac8 in zebrafish. (A and B) RT-PCR performed on different embryonic stages: hdac8 and □-actin expression are shown. (C–D”) hdac8 WISH analyses on zebrafish embryos at 24 and 48 hpf developmental stages. (C) 24 hpf embryo showing hdac8 expression in different regions of the CNS (eyes, diencephalon, mesencephalon, hindbrain), in muscles and in the gut. (C’) Dorsal view (anterior to the left) of the different regions of hdac8 expression in the CNS. (C”) Transverse histological sections (section level is indicated in C with black line) of a previously hybridized embryo at 24 hpf. hdac8 was expressed in the hindbrain. (D–D’) hdac8 WISH at 48 hpf. The transcript persisted in the eyes, diencephalon, mesencephalon, hindbrain and muscles. hdac8 expression was present also in the fin buds at 48 hpf. (D”) Transversal sections of the head at 48 hpf (section level is indicated in D with black line). ep, epiboly; e, eye; di, diencephalon; m, midbrain; h, hindbrain, fb, fin bud; mus, muscles; g, gut. Scale bars indicate 100 μm.
Figure 5

Expression analysis of hdac8 in zebrafish. (A and B) RT-PCR performed on different embryonic stages: hdac8 and □-actin expression are shown. (CD”) hdac8 WISH analyses on zebrafish embryos at 24 and 48 hpf developmental stages. (C) 24 hpf embryo showing hdac8 expression in different regions of the CNS (eyes, diencephalon, mesencephalon, hindbrain), in muscles and in the gut. (C’) Dorsal view (anterior to the left) of the different regions of hdac8 expression in the CNS. (C”) Transverse histological sections (section level is indicated in C with black line) of a previously hybridized embryo at 24 hpf. hdac8 was expressed in the hindbrain. (D–D’) hdac8 WISH at 48 hpf. The transcript persisted in the eyes, diencephalon, mesencephalon, hindbrain and muscles. hdac8 expression was present also in the fin buds at 48 hpf. (D”) Transversal sections of the head at 48 hpf (section level is indicated in D with black line). ep, epiboly; e, eye; di, diencephalon; m, midbrain; h, hindbrain, fb, fin bud; mus, muscles; g, gut. Scale bars indicate 100 μm.

Whole-mount in situ hybridization (WISH) expression analyses in embryos at 24 h post-fertilization (hpf) with a specific probe for zebrafish hdac8 showed the presence of the transcript in the central nervous system (CNS), specifically in the dorsal part and eyes (Fig. 5CC”). Moreover, in line with the expression in adult organs, hdac8 was expressed in muscles and gut (Fig. 5C). At 48 hpf, hdac8 was expressed in the CNS, eyes, muscles and fin buds (Fig. 5DD”).

hdac8 loss-of-function results in increased cell death in the CNS

Loss-of-function studies were carried out by injecting a morpholino (hdac8-MO; Gene Tools LLC, Philomath, OR, USA), a modified antisense oligonucleotide which binds specifically to hdac8 messenger RNA (mRNA) blocking the production of protein. Embryos were initially injected with different concentrations of ATG- or splice-hdac8-MO (0.5, 1 and 1.5 pmol per embryo) in order to assess the dose-dependent effect. One picomole per embryo was identified as the dose capable of generating the greatest number of embryos with typical phenotypic defects without causing global or drastic alterations in the body plane development. Embryos injected with 1 pmole per embryo of ATG- or splice-hdac8-MOs were developmentally abnormal with defects in the cephalic structures (eye size, structure of the CNS) and in the formation of the tail (curved tail). Similar morphological phenotypes were obtained with the injection of the two different morpholinos directed against hdac8. These defects were used as benchmark to classify hdac8-MO into two phenotypic classes (class I mild phenotype and class II severe phenotype) (Fig. 6AC’). The distribution of the phenotypical classes was comparable between the ATG- and splice-hdac8-MOs, strongly suggesting that the morphological defects were caused by hdac8 loss of function (Fig. 6D). To further validate the hdac8-MO efficiency, we analyzed Hdac8 protein levels in 24 hpf embryos injected with ATG- or splice-hdac8-MOs. Quantification analyses indicated that, at this concentration, the efficiency of Hdac8 reduction was ∼50% (Fig. 6EF). Since splice-hdac8-MO was designed against the hdac8 exon1–intron1 junction, the retention of intron1 in morphant embryos was verified by PCR technique (Fig. 6G).

Phenotypical analysis of embryos with hdac8 loss of function. (A–D) Phenotypical analysis of embryos at 24 hpf microinjected with hdac8-MO. (B and C) compared to control embryos (A). (A’, C’) higher magnification of the cephalic region of the embryo in A and C. (D) Quantification of embryos microinjected with hdac8-MO presenting phenotypes with different degree of severity classified as: class I mild phenotype and class II severe phenotype. (E and F) Western blot analyses showed reduced levels of Hdac8 (42 kDa) in the 24 hpf ATG-hdac8-MO injected embryos compared to controls at the same developmental stage (E) and in splice-hdac8-MO injected embryos compared to controls at the same developmental stage (F). Gapdh (36 kDa) housekeeping in (E) and Vinculin (120 kDa) in (F). (G) RT-PCR performed on control and splice-hdac8-MO injected embryos at 24 hpf. RT-PCR primers were designed in exon1 and intron1. The amplification product was 277 bp and comprehended the intron1 in splice-hdac8-MO injected embryos, while in ctrl-MO there was no amplification as the intron1 was removed. Scale bars indicate 100 μm.
Figure 6

Phenotypical analysis of embryos with hdac8 loss of function. (AD) Phenotypical analysis of embryos at 24 hpf microinjected with hdac8-MO. (B and C) compared to control embryos (A). (A’, C’) higher magnification of the cephalic region of the embryo in A and C. (D) Quantification of embryos microinjected with hdac8-MO presenting phenotypes with different degree of severity classified as: class I mild phenotype and class II severe phenotype. (E and F) Western blot analyses showed reduced levels of Hdac8 (42 kDa) in the 24 hpf ATG-hdac8-MO injected embryos compared to controls at the same developmental stage (E) and in splice-hdac8-MO injected embryos compared to controls at the same developmental stage (F). Gapdh (36 kDa) housekeeping in (E) and Vinculin (120 kDa) in (F). (G) RT-PCR performed on control and splice-hdac8-MO injected embryos at 24 hpf. RT-PCR primers were designed in exon1 and intron1. The amplification product was 277 bp and comprehended the intron1 in splice-hdac8-MO injected embryos, while in ctrl-MO there was no amplification as the intron1 was removed. Scale bars indicate 100 μm.

CNS malformations are caused by augmented apoptosis rescued by WNT pathway activation

The abnormal development of cephalic CNS was associated with the presence of apoptotic/necrotic tissues. Hence, TUNEL assays were conducted in hdac8-loss-of-function embryos at 24 hpf for evaluating rate of programmed cell death. Analysis showed increased apoptosis at the level of the midbrain, hindbrain optic vesicles and spinal cord in embryos injected with hdac8-MO compared to the control embryos (Fig. 7AB). As we have previously shown in zebrafish models of cohesinopathies (13,14) that augmented apoptosis was caused by altered canonical WNT pathway, hdac8-loss-of-function embryos were treated with lithium chloride (LiCl) for activating the WNT pathway. Following treatment with LiCl, TUNEL assay showed significantly reduced levels of apoptosis compared to control embryos (83.3%; N = 42; Fig. 7C). Moreover, injecting an in vitro synthesized zebrafish hdac8-mRNA a rescue of the apoptotic phenotype caused by the splice-hdac8-MO was observed, confirming the role for hdac8 in preventing apoptosis (Fig. 7D). For these experiments, the splice-hdac8-MO was utilized for avoiding the possible direct impact of the ATG-hdac8-MO against the injected hdac8-mRNA.

Apoptosis is increased in hdac8-MO-injected embryos and rescued by LiCl treatment or hdac8-mRNA injection. (A–C) Analysis of the apoptotic cells by visual TUNEL staining in embryos at 24 hpf microinjected with hdac8-MO (B) compared to control embryos (A). Dying cells were present in particular at the level of the CNS (arrows in brain and spinal cord) and in optic vescicles as shown by transverse histological sections carried out at the level of the black line (I and II) in A and B (AI, AII, BI, BII). (C) Reduced apoptosis in hdac8-MO injected embryos upon LiCl treatment. (D) Reduced apoptosis was also observed in embryos co-injected with splice-hdac8-MO and hdac8/mRNA. Scale bar indicates 100 μm.
Figure 7

Apoptosis is increased in hdac8-MO-injected embryos and rescued by LiCl treatment or hdac8-mRNA injection. (AC) Analysis of the apoptotic cells by visual TUNEL staining in embryos at 24 hpf microinjected with hdac8-MO (B) compared to control embryos (A). Dying cells were present in particular at the level of the CNS (arrows in brain and spinal cord) and in optic vescicles as shown by transverse histological sections carried out at the level of the black line (I and II) in A and B (AI, AII, BI, BII). (C) Reduced apoptosis in hdac8-MO injected embryos upon LiCl treatment. (D) Reduced apoptosis was also observed in embryos co-injected with splice-hdac8-MO and hdac8/mRNA. Scale bar indicates 100 μm.

Specificity of the apoptotic phenotype observed following hdac8 haploinsufficiency. The increased apoptosis was specifically due to the hdac8 haploinsufficiency as it was obtained by injecting of the two different ATG and splice-hdac8-MO. (A–C) Specificity of the apoptotic phenotype following hdac8 loss of function. The increased apoptotic levels were present in both ATG- and splice-hdac8-MO-injected embryos (B and C) in comparison to controls (A). Fluorescent TUNEL staining in embryos injected with different morpholinos confirmed the specificity of the phenotype. The class II embryos (B’–C’) presented more apoptotic cells than embryos of class I (B and C). (D) Injection of subcritical doses of ATG- and splice-hdac8-MO that singularly did not generate apoptosis demonstrated a synergistic effect on apoptotic levels. SC, spinal cord; di, diencephalon; h, hindbrain; n, notocord. Scale bar indicates 100 μm.
Figure 8

Specificity of the apoptotic phenotype observed following hdac8 haploinsufficiency. The increased apoptosis was specifically due to the hdac8 haploinsufficiency as it was obtained by injecting of the two different ATG and splice-hdac8-MO. (AC) Specificity of the apoptotic phenotype following hdac8 loss of function. The increased apoptotic levels were present in both ATG- and splice-hdac8-MO-injected embryos (B and C) in comparison to controls (A). Fluorescent TUNEL staining in embryos injected with different morpholinos confirmed the specificity of the phenotype. The class II embryos (B’–C’) presented more apoptotic cells than embryos of class I (B and C). (D) Injection of subcritical doses of ATG- and splice-hdac8-MO that singularly did not generate apoptosis demonstrated a synergistic effect on apoptotic levels. SC, spinal cord; di, diencephalon; h, hindbrain; n, notocord. Scale bar indicates 100 μm.

The efficacy and specificity of the hdac8 loss of function were extensively tested with the two hdac8 morpholinos as shown in Fig. 8. Increased apoptosis was obtained with the injection of the ATG or splice-hdac8-MO (Fig. 8BC) in comparison to controls (A); the levels of apoptotic cells were increased in class II embryos with more severe phenotype than class I (Fig. 8B’C’). Moreover, to address a synergistic effect of the two morpholinos, we injected subcritical doses of ATG-hdac8-MO (0,5 pmol/embryo) or splice-hdac8-MO (0,5 pmol/embryo) that singularly did not cause any effects on cell death. When co-injected with subcritical doses of each MO, the typical apoptotic phenotype previously observed by means of full doses injections was found (Fig. 8D).

Discussion

Regulation of neuronal cell death is a fundamental process during both embryonic and adult life (19). During embryonic development, neurons are produced in excess number probably to ensure an adequate number of nerve cells at birth (20). Increased apoptosis during brain development has been associated to abnormal morphology and to adult behavioral abnormalities (21). In the present study, inhibition of HDAC8 enzymatic activity leads to an excessive apoptosis both in murine NSCs and in the developing vertebrate brain. HDAC8 is a histone deacetylase known to act on SMC3 availability; hence, it is considered a player in the cohesin complex (12). Indeed, deacetylation of SMC3 is a critical step for protein recycling in cells. Cohesins and condensins are protein complexes acting prominently as regulators of cell division, controlling deoxyribonucleic acid (DNA) content separation in daughter cells. Intriguingly, germ line mutations in both complexes are associated with human conditions affecting brain development. Biallelic mutations in condensin components NCAPD2, NCAPH, or NCAPD3 cause microcephaly in humans (22). Dominant autosomal or X-linked mutations in cohesin complex genes cause CdLS, a congenital multiorgan syndrome that presents microcephaly and autistic self-aggressive behaviors (9). Previous studies on models of CdLS have reported increased cell death in the developing brain (13,14,23) associated to an impaired activation of the canonical WNT pathway or mitotic imbalance in the rad21 model, in which molecular analyses have shown both by array and RNA sequencing deregulation of the WNT pathway (24,25). Canonical WNT pathway is mediated by activation of β-catenin, reduced in CdLS models, that translocates in the cell nucleus where it binds to DNA for gene expression regulation (26,27). Among known targets, Cyclin D1 (CCND1) is extensively described (28). Notably, CCND1 is known to play a pivotal role during neurogenesis. Indeed, it has been shown that overexpression of the cyclin-dependent kinase 4 (cdk4)–cyclinD1 complex, positive regulators of cell cycle progression, induces NSCs’ expansion (29). Moreover, several studies indicated that shortening of NSCs’ cell cycle in embryonic and adult brain is sufficient for inhibiting neuronal differentiation (30,31). Hence, we sought to evaluate a model of CdLS NSCs. We inhibited HDAC8 using PCI34051, a chemical compound known to specifically act on HDAC8 deacetylase activity (12) in proliferating and differentiating murine NSCs. Our results clearly showed that upon HDAC8 inhibition NSCs reduce their capability of proliferating, confirming recent findings shown in cell lines (32). Likely, this is because of the observed increased apoptosis and it does not translate into an augmented differentiation as expected in physiological condition in smooth muscle (33) and brain (34). It was already demonstrated, in cellular model of glioblastomas, that the knockdown of another cohesin, SMC1A, led to the significant decrease in proliferation of U251 and U87MG cells (35). These results are on line with our in vitro analysis of the role of HDAC8 in NSCs. Importantly, we found a significant reduction in cells positive for the neuronal marker β-tubulin III, indicating that their neurogenic differentiating capabilities are hampered. Importantly, it has been recently shown that retinoic pathway response is impaired in CdLS patients fibroblasts, suggesting a weaken activation following exposure to a master player in neuronal differentiation (36). A neuronal reduction in CdLS patients could explain part of the behavioral and morphological features often reported after birth [as reviewed in (37,38)]. Hence, a detailed analysis in mammals should be conducted for better dissecting this possibility. To note, a consistently high expression of CdLS–cohesins in the developing mouse embryos and human adult CNS, especially in hindbrain and hindbrain-derived structures (39), notwithstanding the non-proliferative characteristics of such organs, has been recently reported. In the present study, Danio rerio models of hdac8 deficiency obtained by morpholino antisense injections confirmed an increased apoptosis in the developing CNS associated with altered canonical WNT pathway. Molecular and morphological alterations could be rescued upon chemical activation by LiCl treatment as previously shown in other CdLS models (13).

In conclusion, we report an association between HDAC8 inhibition—model of CdLS—and increased cell death in the developing neural tissues, both in vitro and in vivo with a consequent reduction in neuronal differentiation capabilities, which could be involved in the severe mental retardation observed in CdLS.

Materials and Methods

Neural stem cells

NSCs obtained from SVZ of 4 months old C57 BL6 male mice were used. Cells were cultivated in a medium containing epidermal growth factor (EGF) and fibroblast growth factor (FGF) (40–42). Three different cultures from three mice were used for the experiments.

PCI34051 treatment

Cells were firstly grown in a large culture flask and then plated in a 12 wells tissue culture plate at the concentration of 10 000 cell/cm2. Experiments were performed in triplicate for each culture. For proliferating cells experiments, cultures were treated either with PCI34051 25 μm, a known HDAC8 inhibitor (12), or with DMSO 1:1000, a concentration that does not alter NSCs’ properties, such as proliferation and differentiation. After 5 days of culture, spheres were harvested and mechanically dissociated to single cells and counted. The fold change was determined dividing the total number of cells by the initial number of plated cells. Differentiation was achieved by plating cells in presence of adhesion molecules Cultrex (Tema Ricerca, Italy) and in absence of growth factors. In a 48 well plate, round sterile coverslip of the diameter of 1 cm was inserted. Wells were coated with 150 μl of Cultrex for 1 h and 40 000 cells were loaded with 500 μl of medium containing FGF but not EGF (40–42) for 2 days. Following growth factor removal, treatment with HDAC8 inhibitor was started. Two different time points (from day 3 to day 7 and from day 5 to day 7) were used. As control, treated cells with DMSO 1:1000 for days 3 to 7 were used. At the end of the treatment, the medium was removed, the cells washed once with Phosphate-Buffered Saline (PBS) and fixed with 4% paraformaldehyde for 10 min. Cells were then washed once with PBS and either used for immunocytochemistry or stored at 4°C. Experiments were run in duplicates.

Silencing NSCs

A 48 multiwell plate was coated with laminin (Synthetic Laminin Peptide, Sigma SCR127, Darmstadt, Germany) using a concentration of 150 ug/ml as suggested by the supplier. Two siRNAs (Qiagen, Germantown, MD, USA) expected to anneal different regions of the HDAC8 transcript (Flexitube siRNA 5 nmol cat nr SI01063895 and catalogue number SI01063902) were used. As negative control AllStars Negative Control siRNA (cat nr 1027280) with no homology to any known mammalian genes and minimal non-specific effects was selected. HiPerFect Transfection Reagent (Qiagen) was used for siRNAs delivery. Four different cultures of NSCs were used, and experiments were run in triplicates. We first plated dissociated cells (10 000 cells per well) on laminin-coated wells as a monolayer in 500 μl of proliferative medium (PM) for 1 day. The following day, incubation medium (with siRNAs and Transfection Reagent prepared following the manufacturer instruction) was added drop-wise onto the attached cells that were incubated under their normal growth conditions for 3 h before adding the PM medium. The medium was changed after 24 h and cells were cultured for 2–3 days. The cells were then harvested, dissociated and counted. siRNAs concentrations were selected in pilot studies, choosing 20 nM as experimental concentration. For analyses of Hdac8 silencing in differentiating NSCs, three different cultures were used.

Immunostaining of differentiated NSC

Differentiation capabilities were assayed by means of immunostaining. For this purpose, antibodies against glial fibrillary acidic protein (GFAP; 1:250, Immunological Sciences AB-10635) and β-tubulin III (1:250, Immunological Sciences AB-10288) were used. Briefly, fixed cells were permeabilized with 0.1% Triton-X in PBS for 10 min at room temperature, then the primary antibodies were added overnight at 4°C in PBS with 10% normal goat serum NGS. Secondary antibodies conjugated with fluorophores were used: Alexa-fluor 488 (Goat anti mouse Immunological Sciences IS20010) and Alexa-fluor 555 (Goat anti rabbit Immunological Sciences IS20012). Nuclei were stained with 4′, 6-Diamidine-2′-phenylindole dihydrochloride (DAPI) 300 nM (43). Images were acquired using a Leica SP2 microscope, Buccinasco, Milan, Italy with Helium/Neon and Argon/Kripton lasers. The number of positive cells was counted and compared within treatments. Experiments were repeated twice. A minimum of 1400 cells for each sample and for each treatment were counted.

Apoptosis assay

Apoptosis in NSCs was quantified using a Caspase-3/CPP32 Colorimetric Assay (BioVision, Milpitas, CA, USA) following manufacturer’s protocol. Briefly, NSCs were harvested after 5 days of culture, resuspended in chilled lysis buffer and centrifuged and supernatant (representing cytosolic extract) was used. Following protein concentration measurement, spectrophotometric detection of the chromophore p-nitroaniline (pNA) after cleavage from the labeled substrate DEVD-pNA allowed for cell death assessment. Samples were run as experimental triplicates and technical duplicates.

Animals

Breeding wild-type fish (zebrafish, D. rerio) of the AB strain were maintained at 28°C on a 14 h light/10 h dark cycle. Embryos were collected by natural spawning, staged according to Kimmel and colleagues (44) and raised at 28°C in fish water (Instant Ocean, Blacksburg, VA, USA, 0,1% methylene blue) in Petri dishes, according to established techniques. Zebrafish embryos were raised and maintained under standard conditions and national guidelines (Italian decree 4 March 2014, n. 26). All experimental procedures were approved by Institutional Animal Care and Use Committee, N. OPBA_93_2017. Embryonic ages are expressed in hpf and dpf.

LiCl was added to fish water for 30 min at the 10–12 somite stages at a concentration of 0.3 M at 28°C as previously described (13). Treated embryos were then washed three times with water and allowed to develop to 24 hpf.

Reverse transcription-PCR assays

Total RNA from 12 samples (an average of 30 embryos per sample) was extracted with the TOTALLY RNA isolation kit (Ambion, Life Technologies, Paisley UK), treated with RQ1 RNase-Free DNase (Promega Madison WI, USA) and oligo(dT)-reverse transcribed using SuperScript II RT (Invitrogen, Carlsbad, CA, USA), according to manufacturers’ instructions. PCR products were loaded and resolved onto 1% agarose gels. The β-actin expression was tested in parallel with the gene of interest as a housekeeping gene control for the complementary DNA loaded.

The following primers were used:

hdac8pr_sense 5′-ACATGAGGGTCGTGAAGCCT-3′

hdac8pr_antisense 5′-ACCGCGTCATTCACATAACA-3′

hdac8fl_sense 5′-ATGAGTGAAAAAAGCGACAG-3′

hdac8fl_antisense 5′-CGATCCTAAACTACATTCTTC-3′

hdac8E1_sense 5′-GTCCAAAGTCAGCAGACT-3′

hdac8I2_antisense 5′-GTGAGATGAACTGCACTCT-3′

In situ hybridization and histological analysis

WISH experiments were carried out as described by Thisse and colleagues (45). For each experiment a minimum of 30 controls and MO-injected embryos were analyzed. hdac8 probe was cloned using RT-PCR primers. For histological sections, stained embryos were refixed in 4% PFA Paraformaldehyde, dehydrated and stored in methanol, wax embedded and sectioned (5 μm). Images of embryos and sections were acquired using a microscope equipped with digital camera with LAS Leica Imaging software (Leica, Wetzlar, Germany). Images were processed using Adobe Photoshop software and, when necessary, different focal planes of the same image have been taken separately and later merged in a single image.

TUNEL staining

For (Terminal deoxynucleotidyl transferase dUTP nick end labeling) assay, a minimum of 24 embryos (per experimental group) were fixed in 4% PFA for 2 h at room temperature. Embryos were washed with methanol at −20°C and then twice with PBC Phosphate-Buffered Saline with Citrate (0.001% Triton X-100; 0.1% sodium citrate in PBS) for 10 min. Staining for apoptotic cells was performed using the AP-In situ Cell Death Detection Kit (Roche Diagnostics, Penzberg, Germany) carefully leaving labeling reagents to react for the same length of time for all experiments. Embryos were incubated at 37°C for 1 h and fluorescent apoptotic cells were detected under a fluorescent microscope (Leica). For the visual staining, embryos were then washed, stained and mounted for microscopic imaging.

Injections

To repress hdac8 mRNA translations, two morpholinos were synthesized (Gene Tools LLC) targeting hdac8-ATG and exon1–intron1 junction (splice-hdac8-MO) (46),

ATG-hdac8-MO: 5′-CATTACTGTCGCTTTTTTCACTCAT-3′

splice-hdac8-MO: 5′-TGCAGAGTGCAGTTCATCTCACCCG-3′,

and used at the concentration of 1 pmole per embryo in 1x Danieau buffer (pH 7.6). A standard control morpholino oligonucleotide (ctrl-MO) was injected in parallel (47). When co-injected, ATG- and splice-hdac8-MOs were used at subcritical doses of 0.5 pmole per embryo in 1x Danieau buffer (pH 7.6). In all experiments, hdac8-MO-injected embryos were compared to embryos injected with the same amount of ctrl-MO at the same developmental stage. For the in vivo test of the specificity of morpholino-mediated knockdown, the rescue of morphants phenotype was evaluated by co-injecting zebrafish hdac8-mRNA at the concentration of 500 pg per embryo.

Western blot

Fish embryos (minimum 30 per experimental group) were lysated in RIPA buffer (5 μl for each embryo) and homogenized. Samples were boiled for 10 min at 95°C. A total of 20 μl of protein sample was size-fractionated by gel Pre-cast (Invitrogen) and transferred with iBlot (Invitrogen). The nitrocellulose membranes were blocked with 5% non-fat dry milk in PBST (PBS containing 0.1% Tween 20) for 30 min at room temperature and subsequently incubated with the primary antibody: rabbit anti-Hdac8 [1:1000, HDAC8 (H-145) sc-11405, Santa Cruz Biotechnology, Santa Cruz, CA, USA and mouse anti-GAPDH (1:2500, Developmental Studies Hybridoma bank)] and mouse anti-Vinculin (1:6000, Sigma), diluted in 4% milk/PBST over night at 4°C. Horseradish peroxidase-conjugated secondary antibody (Sigma Aldrich, St Louis MO, USA) was used for 1 h at room temperature. The antigen signal was detected with the ECL chemiluminescence detection system (Amersham, Piscataway, NJ, USA) as specified by the manufacturer.

Data analysis

Proliferation statistical analysis was performed using Student’s t-test. NSC immunostaining analysis was performed using the one-way analysis of variance followed by Bonferroni’s multiple comparison test. Apotosis assay was analyzed using student’s t-test. P ≤ 0.05 was set as statistically significant. For graphs, Graphpad Prism software was used; for figures, Adobe Photoshop was used.

Acknowledgements

The authors are grateful to the Italian National Association of Volunteers Cornelia de Lange for support and inspiration. The authors want to express their deepest gratitude to Dr Julia Horsfield for manuscript commenting.

Conflict of Interest statement. None declared.

Funding

Fondazione Cariplo (2015-0783 to V.M.); Dipartimento DISS, Linea B, Università degli Studi di Milano (to V.M.); Dipartimento BIOMETRA, Linea B, Universita’ degli Studi di Milano (to A.P.); Fondazione Mariani (Como, Italy) (to A.S.); Molecular and Translational Science-Università degli Studi di Milano scholarship (to P.G.).

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Author notes

These authors should be regarded as joint first authors.

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